MARCUS/pyproject.toml at main · AshleyLab/MARCUS · GitHub

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[build-system]
requires = ["setuptools>=61"]
build-backend = "setuptools.build_meta"

[project]
name = "marcus-cardiac-ai"
version = "1.0.0"
description = "MARCUS: An agentic, multimodal vision-language model for cardiac diagnosis and management."
readme = "README.md"
license = { file = "LICENSE" }
requires-python = ">=3.10"
authors = [
  { name = "Jack W O'Sullivan", email = "jwosullivan@stanford.edu" },
  { name = "Mohammad Asadi" },
  { name = "Lennart Elbe" },
  { name = "Euan A Ashley" },
]
keywords = ["cardiology", "medical-ai", "ecg", "echocardiography", "cmr", "multimodal", "vision-language"]
classifiers = [
  "Development Status :: 5 - Production/Stable",
  "Environment :: Web Environment",
  "Framework :: FastAPI",
  "Intended Audience :: Science/Research",
  "Intended Audience :: Healthcare Industry",
  "Topic :: Scientific/Engineering :: Medical Science Apps.",
  "Topic :: Scientific/Engineering :: Artificial Intelligence",
  "Programming Language :: Python :: 3",
  "Programming Language :: Python :: 3.10",
  "Programming Language :: Python :: 3.11",
  "Programming Language :: Python :: 3.12",
  "License :: OSI Approved :: MIT License",
]
dependencies = [
  "fastapi>=0.104.0",
  "uvicorn[standard]>=0.24.0",
  "python-multipart>=0.0.6",
  "httpx>=0.25.0",
]

[project.optional-dependencies]
dev = ["ruff>=0.1.0", "pytest>=7.0.0", "pytest-asyncio>=0.23.0"]
preprocessing = [
  "pydicom>=2.4.0",
  "opencv-python-headless>=4.8.0",
  "pandas>=2.0.0",
  "numpy>=1.24.0",
  "Pillow>=10.0.0",
  "matplotlib>=3.7.0",
  "tqdm>=4.65.0",
]
eval = ["openai>=1.40.0", "tqdm>=4.65.0", "scipy>=1.10.0", "numpy>=1.24.0"]
training = [
  "torch>=2.0.0",
  "transformers>=4.40.0",
  "datasets>=2.14.0",
  "accelerate>=0.24.0",
  "trl>=0.8.0",
  "peft>=0.7.0",
]
demo = ["gradio>=4.0"]
all = [
  "pydicom>=2.4.0",
  "opencv-python-headless>=4.8.0",
  "pandas>=2.0.0",
  "numpy>=1.24.0",
  "Pillow>=10.0.0",
  "matplotlib>=3.7.0",
  "tqdm>=4.65.0",
  "openai>=1.40.0",
  "scipy>=1.10.0",
  "ruff>=0.1.0",
  "pytest>=7.0.0",
  "pytest-asyncio>=0.23.0",
]

[project.scripts]
marcus-cmr = "video_chat_ui.cli:main_cmr"
marcus-echo = "video_chat_ui.cli:main_echo"
marcus-ecg = "video_chat_ui.cli:main_ecg"
marcus-ui = "video_chat_ui.cli:main_ui_only"
marcus-eval = "video_chat_ui.eval.cli:main"
marcus-demo = "video_chat_ui.demo:main"
# Legacy aliases
video-chat-cmr = "video_chat_ui.cli:main_cmr"
video-chat-echo = "video_chat_ui.cli:main_echo"
video-chat-ecg = "video_chat_ui.cli:main_ecg"
video-chat-ui = "video_chat_ui.cli:main_ui_only"
video-chat-eval = "video_chat_ui.eval.cli:main"

[project.urls]
Repository = "https://github.com/stanford-cardiac-ai/MARCUS"
"Bug Tracker" = "https://github.com/stanford-cardiac-ai/MARCUS/issues"
"HuggingFace" = "https://huggingface.co/stanford-cardiac-ai"
"Paper" = "https://arxiv.org/abs/marcus-cardiac-ai"

[tool.setuptools.packages.find]
where = ["src"]

[tool.setuptools.package-data]
video_chat_ui = ["static/*"]