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While executing the following command: steinbock classify ilastik run
I am getting the following error:
File "/home/mdka00001/miniconda3/envs/imc_analysis/bin/steinbock", line 10, in <module>
sys.exit(steinbock_cmd_group())
^^^^^^^^^^^^^^^^^^^^^
File "/home/mdka00001/miniconda3/envs/imc_analysis/lib/python3.12/site-packages/click/core.py", line 1157, in __call__
return self.main(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/mdka00001/miniconda3/envs/imc_analysis/lib/python3.12/site-packages/click/core.py", line 1078, in main
rv = self.invoke(ctx)
^^^^^^^^^^^^^^^^
File "/home/mdka00001/miniconda3/envs/imc_analysis/lib/python3.12/site-packages/click/core.py", line 1688, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/mdka00001/miniconda3/envs/imc_analysis/lib/python3.12/site-packages/click/core.py", line 1688, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/mdka00001/miniconda3/envs/imc_analysis/lib/python3.12/site-packages/click/core.py", line 1688, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/mdka00001/miniconda3/envs/imc_analysis/lib/python3.12/site-packages/click/core.py", line 1434, in invoke
return ctx.invoke(self.callback, **ctx.params)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/mdka00001/miniconda3/envs/imc_analysis/lib/python3.12/site-packages/click/core.py", line 783, in invoke
return __callback(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/mdka00001/miniconda3/envs/imc_analysis/lib/python3.12/site-packages/steinbock/_cli/utils.py", line 34, in wrapper
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/home/mdka00001/miniconda3/envs/imc_analysis/lib/python3.12/site-packages/steinbock/_env.py", line 42, in use_ilastik_env_wrapper
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/home/mdka00001/miniconda3/envs/imc_analysis/lib/python3.12/site-packages/steinbock/classification/_cli/ilastik.py", line 240, in run_cmd
result = ilastik.run_pixel_classification(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/mdka00001/miniconda3/envs/imc_analysis/lib/python3.12/site-packages/steinbock/classification/ilastik/_ilastik.py", line 284, in run_pixel_classification
result = run_captured(args, env=ilastik_env)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/mdka00001/miniconda3/envs/imc_analysis/lib/python3.12/site-packages/steinbock/_env.py", line 12, in run_captured
with subprocess.Popen(
^^^^^^^^^^^^^^^^^
File "/home/mdka00001/miniconda3/envs/imc_analysis/lib/python3.12/subprocess.py", line 1026, in __init__
self._execute_child(args, executable, preexec_fn, close_fds,
File "/home/mdka00001/miniconda3/envs/imc_analysis/lib/python3.12/subprocess.py", line 1953, in _execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: '/opt/ilastik/run_ilastik.sh'
I tried with both conda package and pip package. Getting error in both.
The text was updated successfully, but these errors were encountered:
While executing the following command:
steinbock classify ilastik run
I am getting the following error:
I tried with both conda package and pip package. Getting error in both.
The text was updated successfully, but these errors were encountered: