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environment.yml
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## Environment for installing Mindboggle
##
## This environment is configured for circleci.com continuous integration
## (testing).
##
## Authors:
## - Arno Klein, 2016 ([email protected]) http://binarybottle.com
##
## Copyright 2016, Child Mind Institute (childmind.org), Apache v2.0 License
#-----------------------------------------------------------------------------
# mhealthx-env environment:
#-----------------------------------------------------------------------------
name: mhealthx-env
#-----------------------------------------------------------------------------
# mindboggle dependencies:
#-----------------------------------------------------------------------------
dependencies:
- python=3.5.1
#-------------------------------------------------------------------------
# nipype + (colormath, pydotplus):
#-------------------------------------------------------------------------
- scipy
- networkx
- lxml
- simplejson
- future
- nose
- pip
- pip:
- prov
- traits
- xvfbwrapper
- https://github.com/binarybottle/mhealthx/archive/master.zip
- colormath
- pydotplus
#-------------------------------------------------------------------------
# remaining dependencies:
#-------------------------------------------------------------------------
#- cmake
#- matplotlib
- numpy
- pandas
#-------------------------------------------------------------------------
# additional testing tools:
#-------------------------------------------------------------------------
- ipython
- pytest
- coverage