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**/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/vvp01_two_2006-4-09_16-40-54/plot_all_epoch_bins_marginal_predictions-Laps all_epoch_binned Marginals.png
**/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/vvp01_two_2006-4-10_12-58-3/display_long_short_laps.png
**/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/vvp01_two_2006-4-10_12-58-3/plot_all_epoch_bins_marginal_predictions-Laps all_epoch_binned Marginals.png
data/figs/**/*.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/gor01_one_2006-6-07_11-26-53/display_long_short_laps.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/gor01_one_2006-6-07_11-26-53/plot_all_epoch_bins_marginal_predictions-Laps all_epoch_binned Marginals.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/gor01_one_2006-6-08_14-26-15/display_long_short_laps.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/gor01_one_2006-6-08_14-26-15/plot_all_epoch_bins_marginal_predictions-Laps all_epoch_binned Marginals.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/gor01_one_2006-6-09_1-22-43/display_long_short_laps.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/gor01_one_2006-6-09_1-22-43/plot_all_epoch_bins_marginal_predictions-Laps all_epoch_binned Marginals.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/gor01_one_2006-6-12_15-55-31/display_long_short_laps.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/gor01_two_2006-6-07_16-40-19/display_long_short_laps.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/gor01_two_2006-6-07_16-40-19/plot_all_epoch_bins_marginal_predictions-Laps all_epoch_binned Marginals.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/gor01_two_2006-6-08_21-16-25/display_long_short_laps.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/gor01_two_2006-6-08_21-16-25/plot_all_epoch_bins_marginal_predictions-Laps all_epoch_binned Marginals.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/gor01_two_2006-6-09_22-24-40/display_long_short_laps.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/gor01_two_2006-6-09_22-24-40/plot_all_epoch_bins_marginal_predictions-Laps all_epoch_binned Marginals.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/gor01_two_2006-6-12_16-53-46/display_long_short_laps.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/gor01_two_2006-6-12_16-53-46/plot_all_epoch_bins_marginal_predictions-Laps all_epoch_binned Marginals.png
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EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/pin01_one_11-03_12-3-25/display_long_short_laps.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/pin01_one_fet11-01_12-58-54/display_long_short_laps.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/pin01_one_fet11-01_12-58-54/plot_all_epoch_bins_marginal_predictions-Laps all_epoch_binned Marginals.png
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EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/vvp01_one_2006-4-09_17-29-30/plot_all_epoch_bins_marginal_predictions-Laps all_epoch_binned Marginals.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/vvp01_one_2006-4-10_12-25-50/display_long_short_laps.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/vvp01_one_2006-4-10_12-25-50/plot_all_epoch_bins_marginal_predictions-Laps all_epoch_binned Marginals.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/vvp01_two_2006-4-09_16-40-54/display_long_short_laps.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/vvp01_two_2006-4-09_16-40-54/plot_all_epoch_bins_marginal_predictions-Laps all_epoch_binned Marginals.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/vvp01_two_2006-4-10_12-58-3/display_long_short_laps.png
EXTERNAL/PhoDibaPaper2024Book/C:/Users/pho/repos/Spike3DWorkEnv/Spike3D/EXTERNAL/PhoDibaPaper2024Book/data/neptune/commander.pho/PhoDibaLongShortUpdated/figs/vvp01_two_2006-4-10_12-58-3/plot_all_epoch_bins_marginal_predictions-Laps all_epoch_binned Marginals.png
data/neptune/figs/*
243_22562_220-pycharm-support-libs
poetry.lock.2025-01-22_backup
EXTERNAL/DEVELOPER_NOTES/UnsortedErrorLogs/scratchpads
EXTERNAL/VSCode_Extensions/2025-02-25_Lab_Black
EXTERNAL/VSCode_Extensions/2025-02-25_Lab_Green_BROKEN.json
.venv_2025
data/figure2.png
data/figure-image.png
data/figure-image_test.png
data/high_percentile_filtered_PBEs_P_Short_scatter.png
data/P_Short_10_2_2_Across Sessions all_scores_ripple_df - all_sessions_all_scores_ripple_df - PBE Per Epoch - None - 'P_Short' (10 Sessions) - 2 Time Bin Sizes_PBE_per_epoch_scatter+hist_pre-post-delta_P_Short.png
data/P_Short_10_2_2_Across Sessions all_scores_ripple_df - allScores - PBE Per Epoch - None - 'P_Short' (10 Sessions) - 2 Time Bin Sizes_PBE_per_epoch_scatter+hist_pre-post-delta_P_Short.png
data/split_by_animal_figure.png
data/2024-12-24 - P_Short_10_2_2_Across Sessions all_scores_ripple_df - allScores - PBE Per Epoch - None - 'P_Short' (10 Sessions) - 2 Time Bin Sizes_PBE_per_epoch_scatter+hist_pre-post-delta_P_Short.png
*.0-standalone_all_shuffles_wcorr_array
*.0-standalone_wcorr_ripple_shuffle_data_only_1026
poetry_venv_2025-03-20.zip
data/FAT_df_result_CSVs
EXTERNAL/DEVELOPER_NOTES/Pasted image 20250408175159.png
data/*_a_new_fully_generic_result.h5
ReviewOfWork_2025-04-14_2025-04-14T17-38-12-676Z_tags_export.json
data/my_figure.png
data/2025-06-30_Apogee_withNormalComputedReplays-qclu_\[1, 2, 4, 6, 7, 8, 9]-frateThresh_5.0_0.hdf
data/timeline_exported.pdf
data/timeline_exported_pyqtgraph.pdf
data/timeline_exported_stack.pdf
data/trial_to_trial_reliability.png
data/trial_to_trial_reliability.svg
main_graphics_layout_widget.png
data/all_timeline_tracks_exported_stack.pdf
.UV_venv.zip
2025-10-27_output.prof
.specstory
EXTERNAL/PhoDibaPaper2024Book/rotated_figure.svg
.groupedtimelineinclude
EXTERNAL/PhoDibaPaper2024Book/2025-11-20_Apogee_cutoff_date-2025-10-02_ALL_GOOD_csv_files_list.csv
*_pos_df.csv
output.pdf
test.csv
*_widget_*.png
data/*_tracks_exported_stack.pdf
max_across_all_prev_epochs_per_pos_frame.npy
non_local_PBE_non_moving_epochs_df.csv
scripts/library_analysis.csv
Cell output 740 \[DW].csv
flat_prominence_2d_peaks_df.csv
2026-01-08_posteriors_data.npz
NOTEBOOK_RUN_LOGS
LibrariesExamples/Silx/example_data/example_t_bin_masks.npy
.cursorindexingignore.bak
exports
burst_detection_results.png
InteractivePipelineLoadFromPickle_Bapun_RatK_D4OpenField_2026-02-18T17-27-54-622Z_tags_export.json
.vscode/groupbookmarks
.cursorindexingignore*
2026-03-10_EXPORTED_NOTEBOOK_SCRIPTS
EXTERNAL/DEVELOPER_NOTES/SCRATCHPADS/scratchpads/__globalScratchpads__/wrap_selected_py_code_into_function
.qt_for_python
data/2026-03-18_peak_promenences_debugging.npz
EXTERNAL/DEVELOPER_NOTES/SCRATCHPADS/scratchpads/__globalScratchpads__
EXTERNAL/DEVELOPER_NOTES/SCRATCHPADS/scratchpads
templating/uv_deps_switcher/backups/pyproject.toml.bak
binned_occupancy_comparisons.svg

# uv-deps-switcher
**/templating/uv_deps_switcher/backups