From b58daf0f603760a5635ab3628b7c5a38cd14f495 Mon Sep 17 00:00:00 2001
From: Naman Gera <namangera15@gmail.com>
Date: Thu, 18 Jul 2024 14:35:16 +0100
Subject: [PATCH] CI: Add code coverage

---
 .github/workflows/tests_run.yml | 16 +++++++++++++---
 codecov.yml                     |  8 ++++++++
 2 files changed, 21 insertions(+), 3 deletions(-)
 create mode 100644 codecov.yml

diff --git a/.github/workflows/tests_run.yml b/.github/workflows/tests_run.yml
index 65634c03..f03bc5eb 100644
--- a/.github/workflows/tests_run.yml
+++ b/.github/workflows/tests_run.yml
@@ -12,7 +12,7 @@ jobs:
   build-linux:
     runs-on: iris-gpu
     container:
-      image: nvidia/cuda:11.6.2-devel-ubi8
+      image: ghcr.io/diamondlightsource/httomolibgpu:dockerfile
       env:
         NVIDIA_VISIBLE_DEVICES: ${{ env.NVIDIA_VISIBLE_DEVICES }}
 
@@ -32,11 +32,21 @@ jobs:
           post-cleanup: 'all'
           init-shell: bash
 
-      - name: Install httomolibgpu
+      - name: Install httomolibgpu & coverage tools
         run: |
           pip install .[dev]
+          pip install coverage
           micromamba list
 
       - name: Run tests
         run: |
-          pytest tests/
+          coverage run -m pytest tests/
+          coverage xml -o /home/runner/coverage.xml
+
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v4
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          files: /home/runner/coverage.xml
+          fail_ci_if_error: true
+          verbose: true
diff --git a/codecov.yml b/codecov.yml
new file mode 100644
index 00000000..7e4d2fbb
--- /dev/null
+++ b/codecov.yml
@@ -0,0 +1,8 @@
+coverage:
+  status:
+    project:
+      default:
+        target: 90%
+comment:
+  layout: "header, diff, flags, files"
+  behavior: default