cleaner pkgdown

fix pkgdown

Author: AdrienLeGuillou

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: slurmworkflow
 Title: Build workflows for the Slurm workload manager
 Version: 0.1.0
-Date: 2023-04-04
+Date: 2023-04-05
 Authors@R:
     c(person(given = "Adrien",
              family = "Le Guillou",

_pkgdown.yml

@@ -2,3 +2,38 @@ url: https://epimodel.github.io/slurmworkflow/
 template:
   bootstrap: 5
 
+reference:
+- title: "Workflow Creation"
+  desc: >
+    Functions to create and edit a workflow
+  contents:
+  - create_workflow
+  - add_workflow_step
+
+- title: "Step Templates"
+  desc: >
+    Functions governing what is run by a step.
+    They are to be used as argument to `add_workflow_step()`
+  contents:
+  - starts_with("step_tmpl")
+
+- title: "Changing the Execution Order"
+  desc: >
+    Functions to query the currently running step and change the step to be run
+    next.
+    These functions are to be used inside a workflow running on an HPC. They
+    allow conditional execution and loop like behavior.
+  contents:
+  - change_next_workflow_step
+  - get_current_workflow_step
+
+- title: "Utilities for Making Custom Step Templates"
+  desc: >
+    Functions used to create custom step templates from scratch.
+    In most case, a new step template can be created as a wrapper around one of
+    the existing templates.
+  contents:
+  - get_workflow_root
+  - load_workflow
+  - helper_use_setup_lines
+  - helper_write_instructions

vignettes/slurmworkflow.Rmd

@@ -31,6 +31,7 @@ Any HPC using [slurm](https://slurm.schedmd.com/) as its workload manager should
 work with slurmworkflow.
 
 HPC tested:
+
 - [Emory's RSPH HPC](https://sph.emory.edu/research/labs/index.html) (in this
   vignette)
 - [Washington's HYAK