feat: CQDG-642 Build docker image

Author: jecos

Diff for: .github/workflows/deploy_minio.yml

@@ -0,0 +1,35 @@
+name: Publish SHA
+
+on:
+  push:
+    branches:
+      - master
+
+  workflow_dispatch:
+    inputs:
+      logLevel:
+        description: 'Log level'
+        required: true
+        default: 'warning'
+      tags:
+        required: false
+        description: 'Publish SHA'
+
+jobs:
+  build:
+    name: Publish SHA
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: olafurpg/setup-scala@v11
+      - name: Build Assembly
+        run: sbt clean assembly
+      - name: Publish obo-parser Image using commit sha and timestamp
+        id: publish-etl-obo-parser-image
+        uses: Ferlab-Ste-Justine/action-push-image@v2
+        with:
+          username: ${{ secrets.FERLAB_DOCKER_HUB_USER }}
+          password: ${{ secrets.FERLAB_DOCKER_HUB_TOKEN }}
+          image: ferlabcrsj/obo-parser
+          tag_format: "{sha}-{timestamp}"
+

Diff for: .github/workflows/publish_sha.yml

@@ -50,3 +50,10 @@ jobs:
           asset_path: target/scala-2.12/obo-parser.jar
           asset_name: obo-parser.jar
           asset_content_type: application/java-archive
+      - name: Push obo-parser image on the registry
+        uses: Ferlab-Ste-Justine/action-push-image@v2
+        with:
+          username: ${{ secrets.FERLAB_DOCKER_HUB_USER }}
+          password: ${{ secrets.FERLAB_DOCKER_HUB_TOKEN }}
+          image: ferlabcrsj/obo-parser
+          tag_format: "{semver}"

Diff for: .github/workflows/deploy_release.yml renamed to .github/workflows/publish_tag.yml

@@ -0,0 +1,3 @@
+FROM apache/spark:3.4.2
+
+COPY target/scala-2.12/obo-parser.jar /app/obo-parser.jar

Diff for: Dockerfile

@@ -4,12 +4,12 @@ name := "obo-parser"
 scalaVersion := "2.12.12"
 organization := "bio.ferlab"
 javacOptions ++= Seq("-source", "1.8", "-target", "1.8", "-Xlint")
-val spark_version = "3.3.1"
-val deltaCoreVersion = "2.1.1"
+val spark_version = "3.4.2"
+val deltaCoreVersion = "2.4.0"
 /* Runtime */
 libraryDependencies += "org.apache.spark" %% "spark-sql" % spark_version % Provided
-libraryDependencies += "org.apache.hadoop" % "hadoop-aws" % spark_version % Provided
-libraryDependencies += "io.delta" %% "delta-core" % deltaCoreVersion
+libraryDependencies += "org.apache.hadoop" % "hadoop-aws" % "3.3.6" % Provided
+libraryDependencies += "io.delta" %% "delta-core" % deltaCoreVersion % Provided
 libraryDependencies += "com.github.pureconfig" %% "pureconfig" % "0.15.0"
 libraryDependencies += "org.apache.poi" % "poi-ooxml" % "5.0.0"
 /* Test */