Simplify package publication using uv

.github/workflows/publish.yml

@@ -2,9 +2,10 @@ name: Publish dea-tools to PyPI
 
 on:
   push:
-    branches:
-      - develop
+    branches: [develop, uv_publish]
     paths:
+      - 'pyproject.toml'
+      - 'README_tools.md'
       - 'Tools/**'
       - '.github/workflows/publish.yml'
   release:
@@ -16,42 +17,35 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
-      - uses: actions/checkout@v2
-
+      # Check out Git repository with full history
+      # Required for `hatchling-vcs` to get correct version
+      - name: Check out
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
       - name: Set up Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
-          python-version: '3.11'  # Pin to <3.12 for compatibility with pip==22.0.4
-
-      - name: Get history and tags for SCM versioning
-        run: |
-          git fetch --prune --unshallow
-          git fetch --depth=1 origin +refs/tags/*:refs/tags/*
-
-      - name: Build dea-tools
-        run: |
-            python3 -m pip install setuptools_scm build
-            python3 -m setuptools_scm
-            cd Tools
-            python3 -m pip install pip==22.0.4
-            python3 -m pip install --use-feature=in-tree-build --no-deps .
-            python3 -c "import dea_tools; print(dea_tools.__version__)"
-            python3 -m build
-
-      - name: pypi-publish
-        # You may pin to the exact commit or the version.
-        # uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29
-        uses: pypa/[email protected]
+          python-version: "3.11"
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v2
         with:
-          # PyPI access token
-          password: ${{ secrets.PYPI_API_TOKEN }}
-          # The target directory for distribution
-          packages_dir: Tools/dist
-          # Check metadata before uploading
-          verify_metadata: true
-          # Do not fail if a Python package distribution exists in the target package index
-          skip_existing: false
-          # Show verbose output.
-          verbose: true
-
+          version: "0.7.5"
+          enable-cache: "true"
+
+      # Setup Python environment with uv
+      - name: Setup Python environment and install dea-tools
+        run: uv sync
+
+      # Package will be built using version automatically
+      # generated from Git by `hatchling-vcs`
+      - name: Build package
+        run: uv build
+
+      # Publish to PyPI
+      - name: Publish package
+        run: uv publish
+        env:
+          UV_PUBLISH_TOKEN: ${{ secrets.PYPI_API_TOKEN }}

.github/workflows/test_notebooks_entirerepo.yml

@@ -2,16 +2,17 @@
 name: Test entire repo against DEA Sandbox image
 
 # This workflow tests the entire repository against DEA Sandbox "stable" image 
-# when Python code changes (i.e. DEA Tools changes) are proposed to the develop branch
+# when Python code changes (i.e. DEA Tools changes) are proposed to develop branch
 
 on:  
-  # Run whenever a pull request to the develop branch modifies Python files
-  # in DEA Tools. This catches potential issues early before changes are merged
+  # Run whenever a pull request to the develop branch modifies the DEA Tools Python
+  # package. This catches potential issues early before changes are merged
   pull_request:
     branches:
       - develop
     paths:
       - '**/*.py'
+      - 'pyproject.toml'
 
   # Allow manual triggering through the GitHub UI
   # Useful for on-demand testing or troubleshooting

pyproject.toml

@@ -32,7 +32,7 @@ dependencies = [
     "aiohttp>=3.5.0",
     # "ciso8601>=2.2.0",  # blocks Python 3.13 installation on Windows
     "dask>=2023.1.0",
-    "dask-ml>=2021.10.17",
+    "dask-ml>=2023.3.24",
     # "eo-tides>=0.7.4",  # requires notebook updates
     "fiona>=1.10.0",
     "folium>=0.16.0",
@@ -42,6 +42,7 @@ dependencies = [
     "joblib>=1.0.0",
     "lxml>=5.0.0",
     "matplotlib>=3.8.0",
+    "numba>=0.57.0",
     "numpy>=1.26.0",
     "odc-algo>=1.0.0",
     "odc-geo[tiff]>=0.4.7",
@@ -207,6 +208,8 @@ DEP001 = [
     "pyfes",               # to fix with eo-tides refactor
     "intertidal",          # to fix with Sandbox upgrade
     "osgeo",               # ignore due to confusion with gdal package
+    "ipywidgets",          # covered by jupyter metapackage
+    "IPython",             # covered by jupyter metapackage  
 ]
 # Project should not contain unused dependencies
 DEP002 = [
@@ -217,6 +220,7 @@ DEP002 = [
     "planetary_computer",  # included for STAC support
     "eo-tides",            # to fix with eo-tides refactor
     "odc-ui",              # ignore `odc.ui` not being recognised as `odc-ui`
+    "numba",               # required to enforce minimum version of llvmlite
 ]
 # Project should not use transitive dependencies
 DEP003 = [