A file set for reference files which are utilized in the analysis of IGVF experiments. For example, genomic references from GENCODE.
| Name | Type | Description | Notes |
|---|---|---|---|
| is_on_anvil | bool | Indicates whether the data object has been submitted to AnVIL. | [optional] |
| preview_timestamp | str | The date the object was previewed. | [optional] |
| release_timestamp | str | The date the object was released. | [optional] |
| taxa | str | The species of the organism. | [optional] |
| publications | List[str] | The publications associated with this object. | [optional] |
| documents | List[str] | Documents that provide additional information (not data file). | [optional] |
| lab | str | Lab associated with the submission. | [optional] |
| award | str | Grant associated with the submission. | [optional] |
| accession | str | A unique identifier to be used to reference the object prefixed with IGVF. | [optional] |
| alternate_accessions | List[str] | Accessions previously assigned to objects that have been merged with this object. | [optional] |
| collections | List[str] | Some samples are part of particular data collections. | [optional] |
| status | str | The status of the metadata object. | [optional] |
| revoke_detail | str | Explanation of why an object was transitioned to the revoked status. | [optional] |
| url | str | An external resource with additional information. | [optional] |
| schema_version | str | The version of the JSON schema that the server uses to validate the object. | [optional] |
| uuid | str | The unique identifier associated with every object. | [optional] |
| notes | str | DACC internal notes. | [optional] |
| aliases | List[str] | Lab specific identifiers to reference an object. | [optional] |
| creation_timestamp | str | The date the object was created. | [optional] |
| submitted_by | str | The user who submitted the object. | [optional] |
| submitter_comment | str | Additional information specified by the submitter to be displayed as a comment on the portal. | [optional] |
| description | str | A plain text description of the object. | [optional] |
| dbxrefs | List[str] | Identifiers from external resources that may have 1-to-1 or 1-to-many relationships with IGVF file sets. | [optional] |
| samples | List[str] | The sample(s) associated with this file set. | [optional] |
| donors | List[str] | The donor(s) associated with this file set. | [optional] |
| file_set_type | str | The category that best describes this curated file set. | [optional] |
| supersedes | List[str] | The file set(s) that this file set supersedes by virtue of being newer, better, or a fixed version of etc. than the one(s) it supersedes. | [optional] |
| id | str | [optional] | |
| type | List[str] | [optional] | |
| summary | str | [optional] | |
| files | List[str] | The files associated with this file set. | [optional] |
| control_for | List[str] | The file sets for which this file set is a control. | [optional] |
| superseded_by | List[str] | File set(s) this file set is superseded by virtue of those file set(s) being newer, better, or a fixed version of etc. than this one. | [optional] |
| submitted_files_timestamp | str | The timestamp the first file object in the file_set or associated auxiliary sets was created. | [optional] |
| input_for | List[str] | The file sets that use this file set as an input. | [optional] |
| construct_library_sets | List[str] | The construct library sets associated with the samples of this file set. | [optional] |
| data_use_limitation_summaries | List[str] | The data use limitation summaries of institutional certificates covering the sample associated with this file set which are signed by the same lab (or their partner lab) as the lab that submitted this file set. | [optional] |
| controlled_access | bool | The controlled access of the institutional certificates covering the sample associated with this file set which are signed by the same lab (or their partner lab) as the lab that submitted this file set. | [optional] |
| assemblies | List[str] | The genome assemblies to which the referencing files in the file set are utilizing (e.g., GRCh38). | [optional] |
| transcriptome_annotations | List[str] | The annotation versions of the reference resource. | [optional] |
from igvf_client.models.curated_set import CuratedSet
# TODO update the JSON string below
json = "{}"
# create an instance of CuratedSet from a JSON string
curated_set_instance = CuratedSet.from_json(json)
# print the JSON string representation of the object
print(CuratedSet.to_json())
# convert the object into a dict
curated_set_dict = curated_set_instance.to_dict()
# create an instance of CuratedSet from a dict
curated_set_from_dict = CuratedSet.from_dict(curated_set_dict)