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More renv traces
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.github/workflows/ci.yaml

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with:
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r-version: 'release'
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use-public-rspm: true
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# - uses: r-lib/actions/setup-renv@v2
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- uses: pre-commit/[email protected]

.pre-commit-config.yaml

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rev: v5.0.0
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hooks:
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- id: trailing-whitespace
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exclude: renv/activate.R
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- id: end-of-file-fixer
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- id: check-yaml
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- id: check-added-large-files

.vscode/settings.json

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"r.alwaysUseActiveTerminal": true,
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"r.bracketedPaste": true,
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"r.rpath.mac": "/opt/homebrew/bin/R",
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"r.useRenvLibPath": true,
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"r.workspaceViewer.clearPrompt": false,
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"r.rterm.mac": "radian",
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"r.libPaths": [
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"/Users/dorme/Research/Virtual_Rainforest/ve_data_science/renv/library/macos/R-4.4/aarch64-apple-darwin23.6.0 "
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]
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}

README.md

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tools.
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* **Poetry**. This is a Python package manager that we use to manage a shared set of
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Python packages used across the project.
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* **R**. We will be using R extensively for analysis and data visualisation.
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* **renv**. This is an R package manager that, like `poetry`, is being used to manage
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the shared set of R packages used across the project.
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* **R**. We will be using R extensively for analysis and data visualisation. At the
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moment, we are managing package use and versioning with a simple list of packages.
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This is currently very light touch and we may use something stricter in the future.
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* **pre-commit**. This is a QA tool - we have a set of configured checks that run
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whenever you try and `git commit` some changes to the repo. If the changes fail any of
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the checks, then you will have to fix them and try again. Sometimes, the QA checks can

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