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Description
ARAs should respond to the following TRAPI query:
{
"message": {
"query_graph": {
"nodes": {
"gene": {
"categories": [
"biolink:Gene"
],
"ids": [
"$INPUTID$"
]
},
"chemical": {
"categories": [
"biolink:ChemicalEntity"
]
}
},
"edges": {
"t_edge": {
"object": "gene",
"subject": "chemical",
"predicates": [
"biolink:affects"
],
"knowledge_type": "inferred",
"qualifier_constraints": [
{
"qualifier_set": [
{
"qualifier_type_id": "biolink:object_aspect_qualifier",
"qualifier_value": "activity_or_abundance"
},
{
"qualifier_type_id": "biolink:object_direction_qualifier",
"qualifier_value": "increased"
}
]
}
]
}
}
}
}
}
Where $INPUTID$ will be replaced with a CURIE for a particular gene.
Some genes that can be used for testing:
MAPK8IP3 NCBIGene:23162
TP53 NCBIGene:7157
P450 NCBIGene:1594
XIST NCBIGene:7503
TSIX NCBIGene:9383
ADNP NCBIGene:23394
BORCS8-MEF2B
MMP9 NCBIGene:4318
MEF2C NCBIGene:4208
MALAT1 NCBIGene:378938
DYRK1A NCBIGene:1859
PCSK1N NCBIGene:27344
TTR NCBIGene:7276
GNAS NCBIGene:2778
FAU NCBIGene:2197
IAPP NCBIGene:3375
SCG5 NCBIGene:6447
B2M NCBIGene:567
GAPDH NCBIGene:2597
Cytochrome oxidase NCBIGene:4512
Cutochrome B
RBP4 NCBIGene:5950
NGLY1 NCBIGene:55768
RHOBTB2 NCBIGene:23221
WDFY3 NCBIGene:23001
PPP3CA NCBIGene:5530
KCNT1 NCBIGene:57582
NALCN NCBIGene:259232
CACNA1A NCBIGene:773
DHX30 NCBIGene:22907
SAMD9L NCBIGene:219285
BICD2 NCBIGene:23299
FHL1 NCBIGene:3075
ATF3 NCBIGene:467
SETBP1 NCBIGene:26040
Engase NCBIGene:64772
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