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pyproject.toml
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[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"
[project]
name = "tjax"
version = "1.2.1"
description = "Tools for JAX."
readme = "README.rst"
requires-python = ">=3.11,<3.14"
license = {file = "LICENSE"}
authors = [{email = "[email protected]"}, {name = "Neil Girdhar"}]
maintainers = [{email = "[email protected]"}, {name = "Neil Girdhar"}]
classifiers = [
"Development Status :: 4 - Beta",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: Apache Software License",
"Operating System :: OS Independent",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.13",
"Programming Language :: Python",
"Topic :: Scientific/Engineering :: Artificial Intelligence",
"Topic :: Software Development :: Libraries :: Python Modules",
"Topic :: Utilities",
"Typing :: Typed",
]
dependencies = [
"array-api-extra>=0.6.0",
"array_api_compat>=1.10",
"jax>=0.4.27",
"numpy>=1.25",
"optax>=0.2.3",
"rich>=13.7",
"typing_extensions>=4.11",
]
[project.optional-dependencies]
dev = [
"chex>=0.1.3",
"flax>=0.10.4",
"isort>=5.13",
"jupyter>=1",
"mypy>=1.12",
"torch>=2.6",
"networkx>=3.1",
"pre-commit>=4",
"pylint>=3.3",
"pyright>=0.0.13",
"pytest>=8",
"ruff>=0.8",
]
[project.urls]
repository = "https://github.com/NeilGirdhar/tjax"
[tool.isort]
line_length = 100
multi_line_output = 0
skip_glob = [".pytype/*.py"]
[tool.pylint.master]
jobs = 0
py-version = "3.11"
load-plugins = [
"pylint.extensions.bad_builtin",
"pylint.extensions.broad_try_clause",
"pylint.extensions.code_style",
"pylint.extensions.consider_refactoring_into_while_condition",
"pylint.extensions.dict_init_mutate",
"pylint.extensions.docparams",
"pylint.extensions.overlapping_exceptions",
"pylint.extensions.typing",
]
[tool.pylint.messages_control]
disable = [
# Ruff
"C0103", "C0105", "C0112", "C0113", "C0114", "C0115", "C0116", "C0121", "C0123", "C0131", "C0132", "C0198", "C0199", "C0201", "C0202", "C0205",
"C0206", "C0208", "C0301", "C0303", "C0304", "C0305", "C0321", "C0410", "C0411", "C0412", "C0413", "C0414", "C0415", "C0501", "C1802", "C1901",
"C2201", "C2401", "C2403", "C2701", "C2801", "C3001", "C3002", "E0001", "E0013", "E0014", "E0100", "E0101", "E0102", "E0103", "E0104", "E0105",
"E0106", "E0107", "E0108", "E0112", "E0115", "E0116", "E0117", "E0118", "E0213", "E0237", "E0241", "E0302", "E0303", "E0304", "E0305", "E0308",
"E0309", "E0402", "E0602", "E0603", "E0604", "E0605", "E0643", "E0704", "E0711", "E1132", "E1142", "E1205", "E1206", "E1300", "E1301", "E1302",
"E1303", "E1304", "E1305", "E1306", "E1307", "E1310", "E1519", "E1520", "E1700", "E2502", "E2510", "E2512", "E2513", "E2514", "E2515", "E4703",
"E6004", "E6005", "R0022", "R0123", "R0124", "R0133", "R0202", "R0203", "R0205", "R0206", "R0402", "R0904", "R0911", "R0912", "R0913", "R0914",
"R0915", "R0916", "R1260", "R1701", "R1702", "R1703", "R1704", "R1705", "R1706", "R1707", "R1710", "R1711", "R1714", "R1715", "R1717", "R1718",
"R1719", "R1720", "R1721", "R1722", "R1723", "R1724", "R1725", "R1728", "R1729", "R1730", "R1731", "R1732", "R1733", "R1734", "R1735", "R1736",
"R2004", "R2044", "R5501", "R6002", "R6003", "R6104", "R6201", "R6301", "W0012", "W0102", "W0104", "W0106", "W0107", "W0108", "W0109", "W0120",
"W0122", "W0123", "W0127", "W0129", "W0130", "W0131", "W0133", "W0150", "W0160", "W0177", "W0199", "W0211", "W0212", "W0245", "W0301", "W0401",
"W0404", "W0406", "W0410", "W0511", "W0602", "W0603", "W0604", "W0611", "W0612", "W0613", "W0622", "W0640", "W0702", "W0705", "W0706", "W0707",
"W0711", "W0718", "W0719", "W1113", "W1201", "W1202", "W1203", "W1301", "W1302", "W1303", "W1304", "W1305", "W1309", "W1310", "W1401", "W1404",
"W1405", "W1406", "W1501", "W1502", "W1508", "W1509", "W1510", "W1514", "W1515", "W1518", "W1641", "W2101", "W2402", "W2601", "W2901", "W3201",
"W3301",
# Missing
"E0601", "R1737", "W0311", "W2301",
# Mine
"C0111", "E1101", "E1102", "E1120", "E1123", "E1130", "E1135", "E1136", "E3701", "R0204", "R0401", "R0801", "R0901", "R0902", "R0903", "R0917",
"R5601", "R6102", "R6103", "W0149", "W0221", "W0222", "W0223", "W0621", "W0717",
]
enable = [
"useless-suppression",
"use-symbolic-message-instead",
]
[tool.pylint.reports]
output-format = "colorized"
[tool.pylint.similarities]
min-similarity-lines = 10
ignore-imports = "yes"
[tool.pyright]
include = ["tjax", "tests"]
stubPath = ""
venvPath = "."
venv = ".venv"
enableTypeIgnoreComments = false
reportImportCycles = true
reportCallInDefaultInitializer = true
reportConstantRedefinition = true
reportDeprecated = true
reportDuplicateImport = true
reportImplicitOverride = true
reportImplicitStringConcatenation = false
reportIncompatibleMethodOverride = true
reportIncompatibleVariableOverride = true
reportInconsistentConstructor = true
reportMatchNotExhaustive = true
reportMissingParameterType = true
reportMissingSuperCall = true
reportMissingTypeArgument = true
reportOverlappingOverload = true
reportPrivateImportUsage = true
reportPropertyTypeMismatch = true
reportShadowedImports = true
reportUninitializedInstanceVariable = true
reportUnknownArgumentType = false
reportUnknownLambdaType = false
reportUnknownMemberType = false
reportUnknownParameterType = false
reportUnknownVariableType = false
reportUnnecessaryCast = true
reportUnnecessaryComparison = true
reportUnnecessaryContains = true
reportUnnecessaryIsInstance = true
reportUnnecessaryTypeIgnoreComment = true
reportUntypedBaseClass = true
reportUntypedClassDecorator = true
reportUntypedFunctionDecorator = true
reportUntypedNamedTuple = true
reportUnusedCallResult = false
reportUnusedClass = true
reportUnusedExpression = true
reportUnusedFunction = true
reportUnusedVariable = true
[tool.mypy]
files = ["tjax", "tests"]
check_untyped_defs = true
disallow_any_generics = true
disallow_incomplete_defs = true
disallow_untyped_calls = true
disallow_untyped_decorators = true
disallow_untyped_defs = true
no_implicit_optional = true
pretty = true
show_error_codes = true
show_error_context = false
strict_equality = true
warn_no_return = true
warn_redundant_casts = true
warn_return_any = true
warn_unreachable = true
warn_unused_configs = true
warn_unused_ignores = true
[[tool.mypy.overrides]]
module = ["networkx", "optax", "optax.contrib", "array_api_compat"]
ignore_missing_imports = true
[tool.ruff]
line-length = 100
[tool.ruff.lint]
preview = true
select = ["ALL"]
ignore = [
"ANN401", # Dynamically typed expressions (Any).
"ARG001", # Unused function argument.
"ARG002", # Unused method argument.
"ARG003", # Unused class method argument.
"ARG004", # Unused static method argument.
"B011", # Do not assert false.
"C901", # Complex structure.
"COM812", # Trailing comma missing.
"CPY001", # Missing copyright.
"D100", # Missing docstring in public module.
"D101", # Missing docstring in public class.
"D102", # Missing docstring in public method.
"D103", # Missing docstring in public function.
"D105", # Missing docstring in magic method.
"D107", # Missing docstring in __init__.
"DOC201", # return is not documented in docstring.
"DOC202", # Docstring should not have a returns section because the function doesn"t return anything.
"DOC402", # DOC402 `yield` is not documented in docstring.
"DOC501", # Raised exception `ValueError` missing from docstring.
"ERA001", # Commented-out code.
"F722", # Syntax error in forward annotation.
"FBT003", # Boolean positional value in function call.
"FIX002", # Line contains TODO, consider resolving the issue.
"G004", # Logging statement uses f-string.
"I001", # Import block is un-sorted or un-formatted.
"PD008", # Use .loc instead of .at. If speed is important, use NumPy.
"PD013", # `.melt` is preferred to `.stack`; provides same functionality
"PGH003", # Use specific rule codes when ignoring type issues.
"PLR0913", # Too many arguments in function definition.
"PLR6301", # Method doesn"t use self.
"PT013", # Found incorrect import of pytest, use simple import pytest instead.
"Q000", # Single quotes found but double quotes preferred.
"RUF021", # Parenthesize `a and b` expressions when chaining `and` and `or` together...
"S101", # Assert used.
"TC001", # Move application import into a type-checking block.
"TC002", # Move third-party import into a type-checking block.
"TC003", # Move standard library import into a type-checking block.
"TD002", # Missing author in TODO; try: # TODO(<author_name>): ....
"TD003", # Missing issue link on the line following this TODO.
"TID252", # Relative imports from parent modules are banned.
"UP037", # Remove quotes from type annotation.
]
[tool.ruff.lint.flake8-import-conventions.extend-aliases]
"array_api_extra" = "xpx"
"equinox" = "eqx"
"itertools" = "it"
"jax.numpy" = "jnp"
"jax.random" = "jr"
"jax.scipy.special" = "jss"
"networkx" = "nx"
"numpy.typing" = "npt"
"optimistix" = "optx"
"optype.numpy" = "onp"
"pyqtgraph" = "pg"
"seaborn" = "sns"
[tool.ruff.lint.flake8-errmsg]
max-string-length = 40
[tool.ruff.lint.isort]
combine-as-imports = true
[tool.ruff.lint.pydocstyle]
convention = "google"
[tool.ruff.lint.pylint]
max-args = 8