setup.py not copying XLS file #20
Description
Hi @adswa ,
After installing package with python setup.py install, I find that the script can't be run without supplying a the jsonmap.json file with the command line parameter -jmap because the ReproNimCDEs.xlsx file in mapping_data isn't copied into the site_packages directory (see below). Any ideas?
[~/Documents/Coding/segstats_jsonld]$ segstats2nidm -f "https://fcp-indi.s3.amazonaws.com/data/Projects/ABIDE/Outputs/mindboggle_swf/mindboggle/freesurfer_subjects/sub-0050190/stats/aseg.stats" -subjid 0050190 -n /Users/dbkeator/Documents/Coding/simple2_NIDM_examples/datasets.datalad.org/abide/RawDataBIDS/SDSU/nidm.ttl -o /Users/dbkeator/Documents/Coding/simple2_NIDM_examples/datasets.datalad.org/abide/RawDataBIDS/SDSU/nidm.ttl
Traceback (most recent call last):
File "/miniconda3/bin/segstats2nidm", line 11, in
load_entry_point('segstats-jsonld==0.0.1', 'console_scripts', 'segstats2nidm')()
File "/miniconda3/lib/python3.7/site-packages/segstats_jsonld-0.0.1-py3.7.egg/segstats_jsonld/fs_to_nidm.py", line 916, in main
fs_stat_file=stats_file)
File "/miniconda3/lib/python3.7/site-packages/segstats_jsonld-0.0.1-py3.7.egg/segstats_jsonld/fs_to_nidm.py", line 458, in remap2json
xls = pd.ExcelFile(xlsxfile)
File "/miniconda3/lib/python3.7/site-packages/pandas/io/excel.py", line 653, in init
self._reader = self._enginesengine
File "/miniconda3/lib/python3.7/site-packages/pandas/io/excel.py", line 424, in init
self.book = xlrd.open_workbook(filepath_or_buffer)
File "/miniconda3/lib/python3.7/site-packages/xlrd/init.py", line 111, in open_workbook
with open(filename, "rb") as f:
FileNotFoundError: [Errno 2] No such file or directory: '/miniconda3/lib/python3.7/site-packages/segstats_jsonld-0.0.1-py3.7.egg/segstats_jsonld/mapping_data/ReproNimCDEs.xlsx'