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[BUG] #266

@pekingb

Description

@pekingb

Describe the bug
When I want to introduce symmetry module into my json file, there are always some problems. I noticed that the hotspot and symmetry are in conflict. So I want to ask whether the parameters like select_exposed or buried and unindexed are in the range of hotspots.

To Reproduce
Please describe any:

  • prepare the json file and pdb file, submit the files to predict
  • system architectures (if relevant)
  • structure files - if it refers to output file, there is a photo shown below.
  • input file : a motif combined with dummy ligand and small molecule.
  • errors:JSONDecodeError: Expecting property name enclosed in double quotes: line 19
    column 9 (char 529)
    Expected behavior
    I will get protein structures with desired symmetry and ideal pocket to bury the small molecule.
    Screenshots
    I don't get valid output under symmetric condition.
    But the following graph shows that the generated protein has a large percentage of disordered secondary structures.
Image

Additional context
json file:

symmetry.json.txt

err file:

869663.txt

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