Apply JuliaFormatter to fix code formatting (#193)

- Applied JuliaFormatter with SciML style guide
- Formatted 3 files

🤖 Generated by OrgMaintenanceScripts.jl

Co-authored-by: SciML Bot <[email protected]>

Author: ChrisRackauckas

src/RootedTrees.jl

@@ -94,7 +94,7 @@ end
     root = first(level_sequence)
     prev = root
     for level in view(level_sequence,
-                      (firstindex(level_sequence) + 1):lastindex(level_sequence))
+             (firstindex(level_sequence) + 1):lastindex(level_sequence))
         if (level <= root) || (level > prev + 1)
             return false
         end
@@ -905,7 +905,7 @@ function all_partitions(t::RootedTree)
     forests = [partition_forest(t, edge_set)]
     skeletons = [partition_skeleton(t, edge_set)]
 
-    for edge_set_value in 1:(2^length(edge_set) - 1)
+    for edge_set_value in 1:(2 ^ length(edge_set) - 1)
         binary_digits!(edge_set, edge_set_value)
         push!(forests, partition_forest(t, edge_set))
         push!(skeletons, partition_skeleton(t, edge_set))
@@ -1056,10 +1056,8 @@ end
 
 # necessary for simple and convenient use since the iterates may be modified
 function Base.collect(partitions::PartitionIterator{TreeInput,
-                                                    TreeOutput}) where {
-                                                                        TreeInput,
-                                                                        TreeOutput
-                                                                        }
+                                                    TreeOutput}) where {TreeInput,
+                                                                        TreeOutput}
     iterates = Vector{Tuple{Vector{TreeOutput}, TreeOutput}}()
     sizehint!(iterates, length(partitions))
     for (forest, skeleton) in partitions
@@ -1092,7 +1090,7 @@ function all_splittings(t::RootedTree)
     forests = Vector{Vector{RootedTree{T, Vector{T}}}}()
     subtrees = Vector{RootedTree{T, Vector{T}}}() # ordered subtrees
 
-    for node_set_value in 0:(2^order(t) - 1)
+    for node_set_value in 0:(2 ^ order(t) - 1)
         binary_digits!(node_set, node_set_value)
 
         # Check that if a node is removed then all of its descendants are removed

src/colored_trees.jl

@@ -43,9 +43,10 @@ Representation of bicolored rooted trees.
 
 See also [`ColoredRootedTree`](@ref), [`RootedTree`](@ref), [`rootedtree`](@ref).
 """
-const BicoloredRootedTree{T <: Integer, V <: AbstractVector{T}, C <: AbstractVector{Bool}} = ColoredRootedTree{T,
-                                                                                                               V,
-                                                                                                               C}
+const BicoloredRootedTree{T <: Integer, V <: AbstractVector{T},
+                          C <: AbstractVector{Bool}} = ColoredRootedTree{T,
+                                                                         V,
+                                                                         C}
 
 """
     rootedtree(level_sequence, color_sequence)
@@ -204,7 +205,7 @@ function Base.:(==)(t1::ColoredRootedTree, t2::ColoredRootedTree)
 
     root1_minus_root2 = first(t1.level_sequence) - first(t2.level_sequence)
     for (e1, c1, e2, c2) in zip(t1.level_sequence, t1.color_sequence, t2.level_sequence,
-                                t2.color_sequence)
+            t2.color_sequence)
         v1 = e1
         v2 = e2 + root1_minus_root2
         (v1 == v2 && c1 == c2) || return false

src/plot_recipes.jl

@@ -72,8 +72,9 @@ function _plot_coordinates(t::AbstractRootedTree,
         x_child = x_children[idx]
         push!(x, nan, x_root, x_child)
         push!(y, nan, y_root, y_child)
-        x_recursive, y_recursive = _plot_coordinates(subtr[idx],
-                                                     x_child, y_child, width / 3, height)
+        x_recursive,
+        y_recursive = _plot_coordinates(subtr[idx],
+                                        x_child, y_child, width / 3, height)
         append!(x, x_recursive)
         append!(y, y_recursive)
     end
@@ -212,10 +213,11 @@ function _plot_coordinates(t::ColoredRootedTree,
         push!(x, [x_root, x_child])
         push!(y, [y_root, y_child])
         push!(colors, [color_root, colormap[first(subtr[idx].color_sequence)]])
-        x_recursive, y_recursive, colors_recursive = _plot_coordinates(subtr[idx],
-                                                                       x_child, y_child,
-                                                                       width / 3, height,
-                                                                       colormap)
+        x_recursive, y_recursive,
+        colors_recursive = _plot_coordinates(subtr[idx],
+                                             x_child, y_child,
+                                             width / 3, height,
+                                             colormap)
         append!(x, x_recursive)
         append!(y, y_recursive)
         append!(colors, colors_recursive)