ReactomePA plot label text overlap

[Jay-Leung]

Prerequisites

• Have you read Feedback and follow the guide?
  • make sure your are using the latest release version
  • read the documents
  • google your quesion/issue

Describe you issue

• Make a reproducible example (e.g. 1)
• your code should contain comments to describe the problem (e.g. what expected and actually happened?)

Hi, I have ran ReactomePA on ChIP-Seq data and wanted to plot the result with dotplot and barplot. However, the label text between the lines seem to overlap and I am not sure why.

The code I ran is:

pathways <- enrichPathway(gene = common_genes, organism = "human", universe = background_genes)

pathways_dotplot <- dotplot(pathways, showCategory=10)
pathways_dotplot

pathways_barplot <- barplot(pathways)
pathways_barplot

The plots generated are:

This issue does not appear with other Gene Ontology/KEGG plots. Could you advise? Thanks!

Ask in right place

• for bugs or feature requests, post here (github issue)
• for questions, please post to Bioconductor or Biostars with tag ReactomePA