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SpikeInterface_Project_ECIC

by adamfed0r

This is the complete pipeline for SpikeInterface Analysis for our datasets

It includes the following steps:

  • importing libraries (np, mpl, pd, si and subfolders, probeinterface)
  • creating a Recording object
  • adding our own spiky probe
  • creating a Sorting object from a KiloSort-ed and phy curated dataset
  • creating a SortingAnalyzer
  • computing various metrics
  • opening the SpikeInterface GUI for visualization of the metrics and the Sorting Analyzer

Our recordings

Simultaneous IC and EC recordings from in vitro rat hippocampus slices IC is done with Patch-Clamp EC is done with spiky, a one-shank, 32-channel "sawtooth-like" EC electrode developed by Domokos Meszéna, PhD The recordings also include 2P imaging