Merge pull request cavalab#167 from folivetti/master

Fix ITEA and TIR and a little bit of GOMEA

Author: folivetti

algorithms/gpgomea/environment.yml

@@ -2,9 +2,12 @@ name: gpg
 channels:
   - conda-forge
 dependencies:
+  - pkgconfig
+  - boost=1.74.0
+  - armadillo=9.900.4
   - make
-  - cmake
-  - python=3.9
+  - cmake=3.28.1
+  - python=3.10
   - eigen=3.4.0
   - python-devtools=0.9.0
   - pybind11

algorithms/itea/environment.yml

@@ -0,0 +1,9 @@
+channels:
+    - conda-forge
+dependencies:
+    - gmp
+    - gsl 
+    - libffi 
+    - libgfortran-ng
+    - blas * openblas 
+    - liblapack

algorithms/itea/regressor.py

@@ -1,3 +1,6 @@
+import sys
+import os
+os.environ["LD_LIBRARY_PATH"] = os.environ["CONDA_PREFIX"] + "/lib"
 import pyITEA as itea
 from itertools import product
 

algorithms/tir/environment.yml

@@ -0,0 +1,9 @@
+channels:
+    - conda-forge
+dependencies:
+    - gmp
+    - gsl 
+    - libffi 
+    - libgfortran-ng
+    - blas * openblas 
+    - liblapack

algorithms/tir/install.sh

@@ -17,7 +17,4 @@ curl --proto '=https' --tlsv1.2 -sSf https://get-ghcup.haskell.org | bash
 export PATH=$PATH:~/.ghcup/bin:~/.cabal/bin 
 
 #conda activate srbench
-cabal install --overwrite-policy=always
-cp ~/.cabal/bin/tir ./python/
-cd python 
-pip install .
+cabal install --overwrite-policy=always --installdir=./python && cd python && pip install .