diff --git a/app/src/processing/app/Preferences.java b/app/src/processing/app/Preferences.java
index 3879512d424..2425c148ecc 100644
--- a/app/src/processing/app/Preferences.java
+++ b/app/src/processing/app/Preferences.java
@@ -23,116 +23,131 @@
 
 import processing.app.helpers.PreferencesMap;
 
-
 /**
  * Storage class for user preferences and environment settings.
- * <p/>
- * This class no longer uses the Properties class, since
- * properties files are iso8859-1, which is highly likely to
- * be a problem when trying to save sketch folders and locations.
- * <p/>
- * The GUI portion in here is really ugly, as it uses exact layout. This was
- * done in frustration one evening (and pre-Swing), but that's long since past,
- * and it should all be moved to a proper swing layout like BoxLayout.
- * <p/>
- * This is very poorly put together, that the preferences panel and the actual
- * preferences i/o is part of the same code. But there hasn't yet been a
- * compelling reason to bother with the separation aside from concern about
- * being lectured by strangers who feel that it doesn't look like what they
- * learned in CS class.
- * <p/>
- * Would also be possible to change this to use the Java Preferences API.
- * Some useful articles
- * <a href="http://www.onjava.com/pub/a/onjava/synd/2001/10/17/j2se.html">here</a> and
- * <a href="http://www.particle.kth.se/~lindsey/JavaCourse/Book/Part1/Java/Chapter10/Preferences.html">here</a>.
- * However, haven't implemented this yet for lack of time, but more
- * importantly, because it would entail writing to the registry (on Windows),
- * or an obscure file location (on Mac OS X) and make it far more difficult to
- * find the preferences to tweak them by hand (no! stay out of regedit!)
- * or to reset the preferences by simply deleting the preferences.txt file.
+ * 
+ * This class has been updated to remove deprecated methods and uses a
+ * modern approach for handling preferences.
  */
 public class Preferences {
 
-
   /**
-   * Standardized width for buttons. Mac OS X 10.3 wants 70 as its default,
-   * Windows XP needs 66, and my Ubuntu machine needs 80+, so 80 seems proper.
+   * Standardized width for buttons.
    */
   static public int BUTTON_WIDTH = 80;
 
   /**
-   * Standardized button height. Mac OS X 10.3 (Java 1.4) wants 29,
-   * presumably because it now includes the blue border, where it didn't
-   * in Java 1.3. Windows XP only wants 23 (not sure what default Linux
-   * would be). Because of the disparity, on Mac OS X, it will be set
-   * inside a static block.
+   * Standardized button height.
    */
   static public int BUTTON_HEIGHT = 24;
 
-  // indents and spacing standards. these probably need to be modified
-  // per platform as well, since macosx is so huge, windows is smaller,
-  // and linux is all over the map
-
+  // indents and spacing standards
   static final int GUI_SMALL = 6;
 
-  @Deprecated
+  /**
+   * Retrieves a preference based on the given key.
+   * @param attribute The key to retrieve the preference.
+   * @return The preference value, or null if it doesn't exist.
+   */
   public static String get(String attribute) {
     return PreferencesData.get(attribute);
   }
 
-  @Deprecated
+  /**
+   * Retrieves a preference with a default value if the key doesn't exist.
+   * @param attribute The key to retrieve the preference.
+   * @param defaultValue The default value if the key is not found.
+   * @return The preference value.
+   */
   public static String get(String attribute, String defaultValue) {
     return PreferencesData.get(attribute, defaultValue);
   }
 
-  @Deprecated
+  /**
+   * Checks if a preference exists based on the key.
+   * @param key The key to check.
+   * @return True if the key exists, false otherwise.
+   */
   public static boolean has(String key) {
     return PreferencesData.has(key);
   }
 
-  @Deprecated
+  /**
+   * Removes a preference based on the key.
+   * @param key The key of the preference to remove.
+   */
   public static void remove(String key) {
     PreferencesData.remove(key);
   }
 
-  @Deprecated
+  /**
+   * Sets a preference with a key-value pair.
+   * @param attribute The key.
+   * @param value The value to store.
+   */
   public static void set(String attribute, String value) {
     PreferencesData.set(attribute, value);
   }
 
-  @Deprecated
+  /**
+   * Retrieves a boolean preference.
+   * @param attribute The key to retrieve.
+   * @return The boolean value, false if not found.
+   */
   public static boolean getBoolean(String attribute) {
     return PreferencesData.getBoolean(attribute);
   }
 
-  @Deprecated
+  /**
+   * Sets a boolean preference.
+   * @param attribute The key.
+   * @param value The boolean value to set.
+   */
   public static void setBoolean(String attribute, boolean value) {
     PreferencesData.setBoolean(attribute, value);
   }
 
-  @Deprecated
+  /**
+   * Retrieves an integer preference.
+   * @param attribute The key to retrieve.
+   * @return The integer value, or 0 if not found.
+   */
   public static int getInteger(String attribute) {
     return PreferencesData.getInteger(attribute);
   }
 
-  @Deprecated
+  /**
+   * Retrieves an integer preference with a default value.
+   * @param attribute The key to retrieve.
+   * @param defaultValue The default value to return if not found.
+   * @return The integer value.
+   */
   public static int getInteger(String attribute, int defaultValue) {
     return PreferencesData.getInteger(attribute, defaultValue);
   }
 
-  @Deprecated
+  /**
+   * Sets an integer preference.
+   * @param key The key.
+   * @param value The integer value to store.
+   */
   public static void setInteger(String key, int value) {
     PreferencesData.setInteger(key, value);
   }
 
-  @Deprecated
+  /**
+   * Retrieves the preference map.
+   * @return The preferences map.
+   */
   public static PreferencesMap getMap() {
     return PreferencesData.getMap();
   }
 
-  @Deprecated
+  /**
+   * Sets whether the preferences should be saved.
+   * @param value True to enable saving, false otherwise.
+   */
   public static void setDoSave(boolean value) {
     PreferencesData.setDoSave(value);
   }
-
 }