Skip to content

Latest commit

 

History

History
50 lines (30 loc) · 2.69 KB

Image_viewer.md

File metadata and controls

50 lines (30 loc) · 2.69 KB

Image Viewer

The Image viewer allows users to visualize tissue slide images.

Image Viewer

How to access the image viewer

The image viewer is available from:

  • Case entity page: Click on the image viewer icon in the Case summary section or in the Biospecimen section - Slides detail. It will display in the image viewer the tissue slide images attached to the Case.

Image Viewer Image Viewer

  • Case table in Exploration and Repository pages: Click on the image viewer icon in the Case table. It will display in the image viewer all the tissue slide images attached to the Case.

Image Viewer

  • Repository page - main search: After selecting your query, click on "View images" in Repository. It will display the tissue slide images of all the cases resulting from the query.

Image Viewer

  • Directly in the File entity page: You can visualize the tissue slide image directly in the file entity page.

Image Viewer

Image viewer features

In the image viewer, you can:

  • Zoom in and zoom out by clicking on + and - icons
  • Reset to default display by clicking on the Home icon
  • Display the image in full screen mode by clicking on the Expand icon
  • View the slide detail by clicking on "Details" button
  • Selecting the area of interest with the thumbnail at the top-right corner

Image Viewer

Example of navigation to the image viewer

  1. Go to Repository - Case facet and click on Add a Case/Biospecimen filter
  2. In the search box of the filter pop-up, look to percent_tumor_cells and add this filter to the Repository
  3. Enter a percentage between 60% and 80% then click on Go!
  4. Click on "View Images" button

Result: The images displayed on the image viewer are filtered based on your query.

Image Viewer Image Viewer