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resources.bib

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@@ -4,7 +4,8 @@ @article{altekruger2023conditional
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year = {2023},
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journal = {Transactions on Machine Learning Research},
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issn = {2835-8856},
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awesome-category = {method}
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awesome-category = {method},
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awesome-tags = {diagnostics; theory}
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}
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@inproceedings{arruda2024anamortized,
@@ -15,7 +16,8 @@ @inproceedings{arruda2024anamortized
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awesome-category = {method},
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awesome-tldr = {Neural posterior estimation for hierarchical models, where the NPE is used in a first stage on a local level and then repeatedly used for global inference leveraging amortization.},
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awesome-link-paper = {https://openreview.net/forum?id=uCdcXRuHnC},
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awesome-link-code = {https://github.com/arrjon/Amortized-NLME-Models/tree/ICML2024}
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awesome-link-code = {https://github.com/arrjon/Amortized-NLME-Models/tree/ICML2024},
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awesome-tags = {parameter estimation; hierarchical models}
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}
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@misc{bahl2024advancing,
@@ -27,7 +29,8 @@ @misc{bahl2024advancing
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primaryclass = {hep-ph},
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publisher = {arXiv},
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archiveprefix = {arXiv},
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awesome-category = {application}
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awesome-category = {application},
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awesome-tags = {physics; simulation-based}
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}
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@article{bieringer2021measuring,
@@ -38,7 +41,8 @@ @article{bieringer2021measuring
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volume = {10},
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pages = {126},
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doi = {10.21468/SciPostPhys.10.6.126},
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awesome-category = {application}
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awesome-category = {application},
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awesome-tags = {simulation-based; physics; parameter estimation}
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}
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@article{bischoff2024practical,
@@ -47,7 +51,8 @@ @article{bischoff2024practical
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year = {2024},
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journal = {Transactions on Machine Learning Research},
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issn = {2835-8856},
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awesome-category = {review}
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awesome-category = {method},
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awesome-tags = {diagnostics; model evaluation}
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}
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@misc{cannon2022investigating,
@@ -59,7 +64,8 @@ @misc{cannon2022investigating
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primaryclass = {stat},
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publisher = {arXiv},
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archiveprefix = {arXiv},
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awesome-category = {method}
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awesome-category = {method},
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awesome-tags = {diagnostics; misspecification; simulation-based}
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}
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@article{cranmer2020frontier,
@@ -86,7 +92,8 @@ @article{dax2023neural
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pages = {171403},
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doi = {10.1103/PhysRevLett.130.171403},
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awesome-category = {method},
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awesome-link-paper = {https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.130.171403}
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awesome-link-paper = {https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.130.171403},
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awesome-tags = {likelihood-based; physics; parameter estimation}
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}
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@article{dingeldein2024amortized,
@@ -96,7 +103,8 @@ @article{dingeldein2024amortized
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journal = {bioRxiv : the preprint server for biology},
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pages = {2024.07.23.604154},
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doi = {10.1101/2024.07.23.604154},
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awesome-category = {application}
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awesome-category = {application},
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awesome-tags = {biology; simulation-based; parameter estimation}
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}
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@article{elsemuller2024deep,
@@ -123,14 +131,16 @@ @article{elsemuller2024sensitivityaware
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awesome-tldr = {Proposes a framework for amortized and thus efficient sensitivity analyses on all major dimensions of a Bayesian model.},
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awesome-link-paper = {https://openreview.net/forum?id=Kxtpa9rvM0},
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awesome-link-code = {https://github.com/bayesflow-org/SA-ABI},
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awesome-tags = {sensitivity analysis; simulation-based; meta learning}
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}
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@inproceedings{falkiewicz2023calibrating,
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title = {Calibrating Neural Simulation-Based Inference with Differentiable Coverage Probability},
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booktitle = {Thirty-Seventh Conference on Neural Information Processing Systems},
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author = {Falkiewicz, Maciej and Takeishi, Naoya and Shekhzadeh, Imahn and Wehenkel, Antoine and Delaunoy, Arnaud and Louppe, Gilles and Kalousis, Alexandros},
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year = {2023},
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awesome-category = {method}
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awesome-category = {method},
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awesome-tags = {diagnostics; simulation-based}
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}
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@inproceedings{foster2021deep,
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volume = {139},
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publisher = {PMLR},
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awesome-category = {method},
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awesome-tags = {BED; adaptive design}
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awesome-tags = {experimental design; adaptive design}
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}
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@article{ghaderi-kangavari2023general,
@@ -155,7 +165,7 @@ @article{ghaderi-kangavari2023general
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issn = {2522-0861, 2522-087X},
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doi = {10.1007/s42113-023-00167-4},
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awesome-category = {application},
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awesome-tags = {cognitive modeling},
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awesome-tags = {cognitive modeling; simulation-based; parameter estimation},
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}
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@misc{habermann2024amortized,
@@ -167,7 +177,7 @@ @misc{habermann2024amortized
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publisher = {arXiv},
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archiveprefix = {arXiv},
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awesome-category = {method},
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awesome-tags = {parameter estimation}
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awesome-tags = {parameter estimation; hierarchical models; simulation-based}
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}
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@article{heringhaus2022reliable,
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issn = {1424-8220},
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doi = {10.3390/s22145408},
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awesome-category = {application},
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awesome-tags = {parameter estimation; simulation-based; engineering}
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}
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@misc{lavin2022simulation,
@@ -217,7 +228,7 @@ @inproceedings{moon2023amortized
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publisher = {Association for Computing Machinery},
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doi = {10.1145/3544548.3581439},
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awesome-category = {application},
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awesome-tags = {human-computer interaction}
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awesome-tags = {human-computer interaction, simulation-based; user interfaces}
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}
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@article{noever-castelos2022model,
@@ -231,7 +242,8 @@ @article{noever-castelos2022model
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issn = {1095-4244, 1099-1824},
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doi = {10.1002/we.2687},
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awesome-category = {application},
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langid = {english}
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langid = {english},
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awesome-tags = {simulation-based}
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}
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@article{papamakarios2021normalizing,
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issn = {1553-7358},
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doi = {10.1371/journal.pcbi.1009472},
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awesome-category = {application},
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langid = {english}
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langid = {english},
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awesome-tags = {epidemiology; public health; simulation-based}
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}
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@article{radev2020bayesflow,
@@ -272,7 +285,8 @@ @article{radev2020bayesflow
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pages = {1452--1466},
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issn = {2162-237X, 2162-2388},
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doi = {10.1109/TNNLS.2020.3042395},
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awesome-category = {method}
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awesome-category = {method},
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awesome-tags = {simulation-based; summary learning; parameter estimation}
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}
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@article{radev2023amortized,
@@ -285,7 +299,8 @@ @article{radev2023amortized
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pages = {4903--4917},
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issn = {2162-237X, 2162-2388},
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doi = {10.1109/TNNLS.2021.3124052},
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awesome-category = {method}
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awesome-category = {method},
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awesome-tags = {model comparison}
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}
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@article{radev2023bayesflow,
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volume = {216},
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pages = {1695--1706},
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publisher = {PMLR},
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awesome-category = {method}
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awesome-category = {method},
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awesome-tags = {joint learning; simulation-based; diagnostics}
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}
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@article{sainsbury-dale2024likelihoodfree,
@@ -328,7 +344,7 @@ @article{sainsbury-dale2024likelihoodfree
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doi = {10.1080/00031305.2023.2249522},
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awesome-category = {method},
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langid = {english},
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awesome-tags = {parameter estimation}
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awesome-tags = {parameter estimation; point estimation; simulation-based}
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}
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@misc{schmitt2023fuse,
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eprint = {2311.10671},
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publisher = {arXiv},
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archiveprefix = {arXiv},
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awesome-category = {method}
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awesome-category = {method},
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awesome-tags = {summary learning; parameter estimation}
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}
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@inproceedings{schmitt2024amortized,
@@ -349,15 +366,17 @@ @inproceedings{schmitt2024amortized
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author = {Schmitt, Marvin and Li, Chengkun and Vehtari, Aki and Acerbi, Luigi and B{\"u}rkner, Paul-Christian and Radev, Stefan T.},
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year = {2024},
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publisher = {arXiv},
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awesome-category = {method}
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awesome-category = {method},
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awesome-tags = {likelihood-based; workflow}
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}
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@inproceedings{schmitt2024consistency,
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title = {Consistency {{Models}} for {{Scalable}} and {{Fast Simulation-Based Inference}}},
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booktitle = {Proceedings of the 38th International Conference on Neural Information Processing Systems},
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author = {Schmitt, Marvin and Pratz, Valentin and K{\"o}the, Ullrich and B{\"u}rkner, Paul-Christian and Radev, Stefan T.},
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year = {2024},
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awesome-category = {method}
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awesome-category = {method},
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awesome-tags = {simulation-based}
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@inproceedings{schmitt2024detecting,
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publisher = {Springer Nature Switzerland},
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address = {Cham},
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awesome-category = {method},
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isbn = {978-3-031-54605-1}
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isbn = {978-3-031-54605-1},
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awesome-tags = {diagnostics; workflow}
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}
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@inproceedings{schmitt2024leveraging,
@@ -382,7 +402,8 @@ @inproceedings{schmitt2024leveraging
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volume = {235},
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pages = {43723--43741},
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publisher = {PMLR},
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awesome-category = {method}
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awesome-category = {method},
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awesome-tags = {likelihood-based; simulation-based}
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}
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@article{schumacher2023neural,
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issn = {2045-2322},
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doi = {10.1038/s41598-023-40278-3},
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awesome-category = {application},
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langid = {english}
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langid = {english},
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awesome-tags = {simulation-based; dynamic modeling; parameter estimation}
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}
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@inproceedings{sharrock2024sequential,
@@ -409,7 +431,8 @@ @inproceedings{sharrock2024sequential
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volume = {235},
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pages = {44565--44602},
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publisher = {PMLR},
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awesome-category = {method}
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awesome-category = {method},
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awesome-tags = {simulation-based}
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@article{shiono2021estimation,
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issn = {01651889},
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doi = {10.1016/j.jedc.2021.104082},
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awesome-category = {application},
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langid = {english}
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langid = {english},
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awesome-tags = {agent modeling; simulation-based}
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@article{siahkoohi2023reliable,
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issn = {0016-8033, 1942-2156},
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doi = {10.1190/geo2022-0472.1},
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awesome-category = {application},
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langid = {english}
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langid = {english},
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awesome-tags = {physics; correction; misspecification}
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@misc{starostin2024fast,
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primaryclass = {cond-mat, physics:physics, stat},
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publisher = {arXiv},
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archiveprefix = {arXiv},
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awesome-category = {method}
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awesome-category = {method},
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awesome-tags = {physics; meta learning}
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@article{tejero-cantero2020sbi,
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doi = {10.2514/6.2022-0631},
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awesome-category = {application},
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isbn = {978-1-62410-631-6},
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langid = {english}
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langid = {english},
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awesome-tags = {engineering; aerospace; simulation-based}
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@article{vonkrause2022mental,
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issn = {2397-3374},
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doi = {10.1038/s41562-021-01282-7},
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awesome-category = {application},
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langid = {english}
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langid = {english},
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awesome-tags = {cognitive modeling; parameter estimation}
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@inproceedings{ward2022robust,
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title = {Robust Neural Posterior Estimation and Statistical Model Criticism},
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booktitle = {Proceedings of the 36th International Conference on Neural Information Processing Systems},
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author = {Ward, Daniel and Cannon, Patrick and Beaumont, Mark and Fasiolo, Matteo and Schmon, Sebastian M.},
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year = {2022},
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awesome-category = {method}
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awesome-category = {method},
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awesome-tags = {model evaluation; simulation-based}
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@article{wang2024missing,
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awesome-category = {method},
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awesome-tldr = {Encoding missing data in a time series by augmenting the data vector with binary indicators for presence or absence yields the most robust performance.},
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awesome-link-paper = {https://doi.org/10.1371/journal.pcbi.1012184},
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awesome-link-code = {https://github.com/emune-dev/Data-missingness-paper}
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awesome-link-code = {https://github.com/emune-dev/Data-missingness-paper},
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awesome-tags = {missing data; simulation-based; parameter estimation}
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@inproceedings{wehenkel2024simulationbased,
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title = {Simulation-Based Inference for Cardiovascular Models},
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booktitle = {{{NeurIPS}} Workshop},
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author = {Wehenkel, Antoine and Behrmann, Jens and Miller, Andrew C. and Sapiro, Guillermo and Sener, Ozan and Cameto, Marco Cuturi and Jacobsen, J{\"o}rn-Henrik},
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year = {2024},
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awesome-category = {application}
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awesome-category = {application},
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awesome-tags = {medicine; simulation-based; parameter estimation}
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@inproceedings{wildberger2023flow,
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year = {2023},
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volume = {36},
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pages = {16837--16864},
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awesome-category = {method},
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awesome-tags = {simulation-based}
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@article{zeng2023probabilistic,
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issn = {2190-5452, 2190-5479},
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doi = {10.1007/s13349-022-00638-5},
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awesome-category = {application},
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langid = {english}
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langid = {english},
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awesome-tags = {structural health monitoring}
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@inproceedings{zhou2024evaluating,
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title = {Evaluating {{Sparse Galaxy Simulations}} via {{Out-of-Distribution Detection}} and {{Amortized Bayesian Model Comparison}}},
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booktitle = {38th {{Conference}} on {{Neural Information Processing Systems}}},
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author = {Zhou, Lingyi and Radev, Stefan T. and Oliver, William H. and Obreja, Aura and Jin, Zehao and Buck, Tobias},
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year = {2024},
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awesome-category = {application}
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awesome-category = {application},
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awesome-tags = {physics; model evaluation; model comparison}
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}

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