Introduce Rust code into Biotite #1132
padix-keytest_and_deploy.yml
on: pull_request
Build CCD and wheel for reusing it in several CI jobs
5m 17s
Check code style
39s
Generate wheels matrix
12s
Build source distribution
26s
Test interfaces to databases and applications
5m 14s
Test interface to Muscle 5
1m 4s
Build documentation
6m 7s
Run benchmarks
10m 45s
Upload CCD to GitHub Releases
6s
Matrix: Build & Test
Upload documentation to GitHub Releases and documentation website
0s
Upload package to GitHub Releases & PyPI
0s
Annotations
41 errors and 13 warnings
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Check code style
Process completed with exit code 101.
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Build & Test (cp314-macosx_x86_64, macos-latest)
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Build & Test (cp314-macosx_x86_64, macos-latest)
cibuildwheel: Command ['/private/var/folders/kg/7q73ww8s3llgyl61c9z_j5g40000gn/T/cibw-run-3hcv08kn/cp314-macosx_x86_64/build/venv/bin/python', '-m', 'build', '/Users/runner/work/biotite/biotite', '--wheel', '--outdir=/private/var/folders/kg/7q73ww8s3llgyl61c9z_j5g40000gn/T/cibw-run-3hcv08kn/cp314-macosx_x86_64/built_wheel'] failed with code 1.
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Build & Test (cp312-macosx_arm64, macos-latest)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp313-macosx_x86_64, macos-latest)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp313-macosx_arm64, macos-latest)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp311-win_amd64, windows-latest)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp311-win_amd64, windows-latest)
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Build & Test (cp313-win_amd64, windows-latest)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp313-win_amd64, windows-latest)
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Build & Test (cp312-win_amd64, windows-latest)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp312-win_amd64, windows-latest)
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Build & Test (cp314-win_amd64, windows-latest)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp314-win_amd64, windows-latest)
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Build & Test (cp312-manylinux_x86_64, ubuntu-latest)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp312-manylinux_x86_64, ubuntu-latest)
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Build & Test (cp311-manylinux_aarch64, ubuntu-24.04-arm)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp311-manylinux_aarch64, ubuntu-24.04-arm)
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Build & Test (cp313-manylinux_x86_64, ubuntu-latest)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp313-manylinux_x86_64, ubuntu-latest)
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Build & Test (cp312-manylinux_aarch64, ubuntu-24.04-arm)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp312-manylinux_aarch64, ubuntu-24.04-arm)
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Build & Test (cp312-macosx_x86_64, macos-latest)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp312-macosx_x86_64, macos-latest)
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Build & Test (cp312-macosx_x86_64, macos-latest)
cibuildwheel: Command ['/private/var/folders/kg/7q73ww8s3llgyl61c9z_j5g40000gn/T/cibw-run-9vfofdh0/cp312-macosx_x86_64/build/venv/bin/python', '-m', 'build', '/Users/runner/work/biotite/biotite', '--wheel', '--outdir=/private/var/folders/kg/7q73ww8s3llgyl61c9z_j5g40000gn/T/cibw-run-9vfofdh0/cp312-macosx_x86_64/built_wheel'] failed with code 1.
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Build & Test (cp314-macosx_arm64, macos-latest)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp314-macosx_arm64, macos-latest)
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Build & Test (cp314-manylinux_aarch64, ubuntu-24.04-arm)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp314-manylinux_aarch64, ubuntu-24.04-arm)
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Build & Test (cp314-manylinux_x86_64, ubuntu-latest)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp314-manylinux_x86_64, ubuntu-latest)
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Build & Test (cp313-manylinux_aarch64, ubuntu-24.04-arm)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp313-manylinux_aarch64, ubuntu-24.04-arm)
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Build & Test (cp311-manylinux_x86_64, ubuntu-latest)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp311-manylinux_x86_64, ubuntu-latest)
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Build & Test (cp311-macosx_arm64, macos-latest)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp311-macosx_arm64, macos-latest)
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Build & Test (cp311-macosx_x86_64, macos-latest)
The strategy configuration was canceled because "test-and-build.cp314-macosx_x86_64_macos" failed
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Build & Test (cp311-macosx_x86_64, macos-latest)
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Run benchmarks
Process completed with exit code 1.
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Run benchmarks
Error: failed to execute the benchmark process, exit code: 1
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Check code style
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Check code style
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Check code style
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Check code style
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Test interface to Muscle 5
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Test interfaces to databases and applications
warning libmamba You are using 'pip' as an additional package manager.
Be aware that packages installed with 'pip' are managed independently from 'conda-forge' channel.
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Test interfaces to databases and applications
warning libmamba [dssp-4.5.7-py312h233929b_1] The following files were already present in the environment:
- share/libcifpp/components.cif
- share/libcifpp/mmcif_ddl.dic
- share/libcifpp/mmcif_ma.dic
- share/libcifpp/mmcif_pdbx.dic
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Test interfaces to databases and applications
warning libmamba [ossuuid-1.6.2-h5888daf_1001] The following files were already present in the environment:
- lib/libuuid.a
- lib/libuuid.so
- lib/pkgconfig/uuid.pc
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Test interfaces to databases and applications
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Build documentation
warning libmamba You are using 'pip' as an additional package manager.
Be aware that packages installed with 'pip' are managed independently from 'conda-forge' channel.
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Build documentation
warning libmamba [dssp-4.5.7-py312h233929b_1] The following files were already present in the environment:
- share/libcifpp/components.cif
- share/libcifpp/mmcif_ddl.dic
- share/libcifpp/mmcif_ma.dic
- share/libcifpp/mmcif_pdbx.dic
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Build documentation
warning libmamba [ossuuid-1.6.2-h5888daf_1001] The following files were already present in the environment:
- lib/libuuid.a
- lib/libuuid.so
- lib/pkgconfig/uuid.pc
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Build documentation
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Artifacts
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ccd
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36.2 MB |
sha256:a5a05cfdfe3cd9faabd1d547021a9f176f87b37885e6b1e869495173d1ec6603
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documentation
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74.1 MB |
sha256:bf0b1e649a8f26e3099d37ed2711df7b1255fa0f896cd491f1c0184d978033ac
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internal-build
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60.4 MB |
sha256:fd8aaaf0bd3b4263288fa9e7a8410dd4a5814cc14fd385bfa6a090cb11632cab
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release-sdist
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36.8 MB |
sha256:abf87fde35213bb825654464396e63d9313523e41986aa026df350be9eab4c1a
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