[r] Prepare package for CRAN #60
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| name: R-CMD-check | |
| on: | |
| pull_request: | |
| branches: [main] | |
| workflow_dispatch: | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.os }} | |
| name: ${{ matrix.os }} | |
| timeout-minutes: 120 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| ENABLE_INSTALL_COUNTING: no | |
| _R_CHECK_BUILD_VIGNETTES_: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install binary dependencies on ubuntu | |
| if: matrix.os == 'ubuntu-latest' | |
| shell: bash | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libhdf5-dev libhwy-dev | |
| sudo apt-get isntall -y libhwy-dev || true | |
| - name: Install binary dependencies on macOS | |
| if: matrix.os == 'macos-latest' || matrix.os == 'macos-13' | |
| shell: bash | |
| run: | | |
| brew update | |
| brew install hdf5 pkg-config highway | |
| - name: Configure compilation flags | |
| shell: bash | |
| run: | | |
| cat <<'MAKEVARS' > "$GITHUB_WORKSPACE/Makevars.user" | |
| MAKEFLAGS=--jobs=3 | |
| MAKEVARS | |
| echo "R_MAKEVARS_USER=$GITHUB_WORKSPACE/Makevars.user" >> "$GITHUB_ENV" | |
| - name: Install Highway on Windows (MSYS2 UCRT64) | |
| if: matrix.os == 'windows-latest' | |
| uses: msys2/setup-msys2@v2 | |
| with: | |
| release: false | |
| update: true | |
| cache: true | |
| install: >- | |
| base-devel | |
| git | |
| mingw-w64-ucrt-x86_64-toolchain | |
| mingw-w64-ucrt-x86_64-pkgconf | |
| mingw-w64-ucrt-x86_64-highway | |
| msystem: UCRT64 | |
| path-type: minimal | |
| - name: Expose UCRT64 pkg-config to PATH (Windows) | |
| if: matrix.os == 'windows-latest' | |
| shell: bash | |
| run: | | |
| echo "C:/msys64/ucrt64/bin" >> $GITHUB_PATH | |
| # Ensure pkg-config finds the .pc files for UCRT64 | |
| echo "PKG_CONFIG_PATH=C:/msys64/ucrt64/lib/pkgconfig" >> $GITHUB_ENV | |
| echo "PKG_CONFIG=C:/msys64/ucrt64/bin/pkg-config.exe" >> $GITHUB_ENV | |
| - name: Handle Windows big object files | |
| if: matrix.os == 'windows-latest' | |
| shell: bash | |
| run: | | |
| echo "CXXFLAGS += -Wa,-mbig-obj" >> "$GITHUB_WORKSPACE/Makevars.user" | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| Ncpus: '3' | |
| use-public-rspm: true | |
| extra-repositories: | | |
| https://bioconductor.org/packages/release/data/annotation | |
| https://bpcells.github.io/drat | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache-version: 1 | |
| extra-packages: | | |
| any::testthat | |
| any::decor | |
| working-directory: 'r' | |
| needs: check | |
| - name: Check package | |
| uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| working-directory: r | |
| build_args: c("--no-build-vignettes") | |
| upload-snapshots: false | |
| error-on: '"error"' | |