@@ -17,34 +17,15 @@ documentation](https://github.com/boalang/study-template).
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You need a GNU Make compatible build system. Tested on GNU Make 3.81.
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+ You will also need Python to run the analyses. See the [ Python
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+ requirements] ( requirements.md#python-requirements ) for more information.
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+
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Note that the Boa jobs themselves are marked public, so you do not need a Boa
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user to view the actual jobs/output via the website. However, the Boa API
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requires a user/password to use it, so programmatically downloading (even
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public jobs) currently requires authenticating. You can, however, manually
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download each of the query outputs from the public URLs.
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- ### Python Requirements
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-
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- Python 3 is required for all scripts. Tested on Python ** TODO: put Python
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- version used here** .
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-
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- See ` requirements.txt ` for the package requirements. To install them, run:
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-
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- ``` sh linenums="0"
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- pip3 install -r requirements.txt
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- ```
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-
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- There are also optional packages you can install to improve your experience.
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-
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- #### Optional Python Requirements
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-
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- If you install ` tqdm>=4.64.0 ` , some scripts will display a progress bar. This
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- can be very useful when processing extremely large (multi-GB) output files.
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-
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- If you install ` keyring>=23.8.2 ` , you can store your Boa API credentials in
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- your OS's keyring. This is more secure than storing it in plaintext in the
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- ` .env ` file. If you don't utilize either of those options, it will prompt you
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- for your username/password (once for ** each** output it tries to download!).
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------------------------------------------------------
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@@ -62,22 +43,8 @@ make run-docker
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## File Organization
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- Here is an overview of the folders layout. The root contains scripts for
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- generating tables/figures for the paper, a ` Makefile ` for running scripts, and
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- this ` README.md ` file.
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-
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- ### Subdir: ` boa `
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- These are the Boa queries used to generate data for the paper.
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-
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- ### Subdir: ` data `
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- This is the output of the Boa queries (the ` .txt ` ) files, as well as processed
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- versions of that output (` .csv ` and ` .parquet ` ).
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-
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- ### Subdir: ` figures `
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- Any generated figures (` .pdf ` ) will go into this folder.
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-
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- ### Subdir: ` tables `
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- Any generated tables (` .tex ` ) will go into this folder.
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+ The organization of a replication package is the same as in the original study.
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+ See the page on [ Paths] ( research/paths.md ) for more information.
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