+To accomplish these goals, the study template automatically manages a lot of the details such as when to run a Boa query, when to download it, automatically converting the output to CSV, and providing some helper functions in Python to make it easier to analyze that data. Generally, researchers using the study template simply need to write their Boa queries, write the Python analyses to process the output, and then run `make` to execute the study. The study template figures out what queries need to be run, what outputs need to be downloaded, and what analyses need to be run based on what files have changed since the last run.
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