fix some broken docs links

Author: psybers

Diff for: .vscode/settings.json

@@ -19,5 +19,25 @@
     "explorer.fileNesting.expand": false,
     "explorer.fileNesting.patterns": {
         "study-config.json": "jobs.json, Makefile, Makefile.study"
-    }
+    },
+    "workbench.colorCustomizations": {
+        "activityBar.activeBackground": "#2f7c47",
+        "activityBar.background": "#2f7c47",
+        "activityBar.foreground": "#e7e7e7",
+        "activityBar.inactiveForeground": "#e7e7e799",
+        "activityBarBadge.background": "#422c74",
+        "activityBarBadge.foreground": "#e7e7e7",
+        "commandCenter.border": "#e7e7e799",
+        "sash.hoverBorder": "#2f7c47",
+        "statusBar.background": "#215732",
+        "statusBar.foreground": "#e7e7e7",
+        "statusBarItem.hoverBackground": "#2f7c47",
+        "statusBarItem.remoteBackground": "#215732",
+        "statusBarItem.remoteForeground": "#e7e7e7",
+        "titleBar.activeBackground": "#215732",
+        "titleBar.activeForeground": "#e7e7e7",
+        "titleBar.inactiveBackground": "#21573299",
+        "titleBar.inactiveForeground": "#e7e7e799"
+    },
+    "peacock.color": "#215732"
 }

Diff for: docs/index copy.md

@@ -3,9 +3,7 @@ Template](https://github.com/boalang/study-template).  If you want to work with
 this package beyond simply re-generating the paper's figures and tables, we
 **strongly** encourage you to utilize [Visual Studio
 Code](https://code.visualstudio.com/) with the [Boa Language and Infrastructure
-Extension](https://marketplace.visualstudio.com/items?itemName=Boa.boalang)
-installed.  For more information, see the [Study Template
-README](README-study-template.md).
+Extension](vscode.md) installed.  For more information, see [Using the Template](research/index.md).
 
 If you have that extension, you can avoid running terminal commands (like
 `make`) and instead simply open the study-config.json file

Diff for: docs/replications.md

@@ -1,6 +1,6 @@
 # Using the Template
 
-/// admonition | If you downloaded a replication package that utilizes the study template, please see the section on [Using a Replication](index copy.md).
+/// admonition | If you downloaded a replication package that utilizes the study template, please see the section on [Using a Replication](../replications.md).
     type: warning
 ///
 

Diff for: docs/research/index.md

@@ -7,14 +7,14 @@ Note: While you can use this extension to write Boa queries, most functionality
 ### Editing Boa Queries
 This extension provides support for writing Boa queries:
 
-<img src="https://github.com/boalang/vscode/raw/HEAD/images/syntax.gif" alt="Query Writing">
+![Query Writing](https://github.com/boalang/vscode/raw/HEAD/images/syntax.gif)
 
 This includes things like syntax highlighting, the ability to insert useful code snippets, code completion, and support for study template substitutions (templates).
 
 ### Submitting and Managing Boa Jobs
 The extensions also provides support for submittin queries to Boa and managing existing jobs:
 
-<img src="https://github.com/boalang/vscode/raw/HEAD/images/jobs.gif" alt="Job Management">
+![Job Management](https://github.com/boalang/vscode/raw/HEAD/images/jobs.gif)
 
 This allows you to effectively stay in the IDE and never need to go to the Boa website.
 
@@ -23,7 +23,7 @@ Boa provides a study template to help manage running empirical studies using Boa
 
 This plugin tightly integrates with the study template:
 
-<img src="https://github.com/boalang/vscode/raw/HEAD/images/studytemplate.gif" alt="Study Template">
+![Study Template](https://github.com/boalang/vscode/raw/HEAD/images/studytemplate.gif)
 
 Providing support for managing the substitutions, running and downloading query output, and running analyses.
 

Diff for: docs/vscode.md

@@ -38,13 +38,14 @@ theme:
     - navigation.instant.progress
     - navigation.top
     - content.code.copy
+    - content.tabs.link
     - search.suggest
     - search.highlight
   language: en
   logo: images/boa.png
   favicon: images/boa.png
   icon:
-    repo: fontawesome/brands/git-alt
+    repo: material/git
     edit: material/pencil 
     view: material/eye
   palette: