Freesurfer Longitudinal Stream Error

[asw39]

Hi,

This is my first time seeking support here so I apologize if I am not familiar with the community's conventions.

I am encountering errors when processing Freesurfer longitudinal stream (Freesurfer v6.0). Cross-sectional streams proceeded and completed without error, but base template creation and all following steps failed.

Created a txt script for the base template creation: Here is a sample:
module load freesurfer
export FREESURFER_HOME=/.../.../freesurfer
source $FREESURFER_HOME/SetUpFreeSurfer.sh

recon-all -base SA14c -tp P10 -tp P11 -tp P12 -all

This script was separate from the following step (this was a separate .txt file):
recon-all -long P12 SA14c -all -no-isrunning
recon-all -long P12 SA14c -brainstem-structures

The common error I received from the base template creation: (from the recon-all.error log)
$Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 user Exp $
/.../.../freesurfer/bin/recon-all
PWD /.../.../subjects/SA14c/label
CMD mri_label2label --srcsubject fsaverage --srclabel /.../.../subjects/fsaverage/label/lh.BA1_exvivo.label --trgsubject SA14c --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface

Following the template creation, it was not possible to go from there to create the individual longitudinal mri output based on the base template

I'd be really grateful for help with this debugging! Thank you.

[denisri]

Hi,
I'm afraid you should rather ask to a Freesurfer-centered community: here it is a Brainvisa discussion forum, and we have a limited expertise with Freesurfer, even if one of the Brainvisa modules do wrap some calls to Freesurfer.
Moreover I don't understand your problem: I see no error message in your message and log.