fix tests

Author: hanars

v03_pipeline/lib/misc/io_test.py

@@ -63,7 +63,7 @@ def test_remap_pedigree_hash(self) -> None:
                     TEST_PEDIGREE_3_REMAP,
                 ),
             ),
-            -560434714,
+            573002191,
         )
 
     def test_import_vcf(self) -> None:

v03_pipeline/lib/paths_test.py

@@ -15,7 +15,6 @@
     metadata_for_run_path,
     new_variants_table_path,
     project_pedigree_path,
-    project_remap_path,
     project_table_path,
     relatedness_check_table_path,
     remapped_and_subsetted_callset_path,

v03_pipeline/lib/tasks/dataproc/misc_test.py

@@ -37,8 +37,6 @@ def test_to_kebab_str_args(self, _: Mock):
                 'test_callset',
                 '--project-guids',
                 '["R0113_test_project"]',
-                '--project-remap-paths',
-                '["test_remap"]',
                 '--project-pedigree-paths',
                 '["test_pedigree"]',
                 '--skip-check-sex-and-relatedness',

v03_pipeline/lib/tasks/update_variant_annotations_table_with_new_samples_test.py

@@ -844,7 +844,6 @@ def test_mito_update_vat(
                                 project_guid='R0115_test_project2',
                                 remap_pedigree_hash=hl.eval(
                                     remap_pedigree_hash(
-                                        'not_a_real_file',
                                         TEST_PEDIGREE_5,
                                     ),
                                 ),
@@ -943,7 +942,6 @@ def test_sv_multiple_vcf_update_vat(
                             project_guid='R0115_test_project2',
                             remap_pedigree_hash=hl.eval(
                                 remap_pedigree_hash(
-                                    'not_a_real_file',
                                     TEST_PEDIGREE_5,
                                 ),
                             ),
@@ -1440,7 +1438,6 @@ def test_sv_multiple_vcf_update_vat(
                             project_guid='R0115_test_project2',
                             remap_pedigree_hash=hl.eval(
                                 remap_pedigree_hash(
-                                    'not_a_real_file',
                                     TEST_PEDIGREE_5,
                                 ),
                             ),
@@ -1450,7 +1447,6 @@ def test_sv_multiple_vcf_update_vat(
                             project_guid='R0115_test_project2',
                             remap_pedigree_hash=hl.eval(
                                 remap_pedigree_hash(
-                                    'not_a_real_file',
                                     TEST_PEDIGREE_5,
                                 ),
                             ),
@@ -1592,7 +1588,6 @@ def test_gcnv_update_vat_multiple(
                             project_guid='R0115_test_project2',
                             remap_pedigree_hash=hl.eval(
                                 remap_pedigree_hash(
-                                    'not_a_real_file',
                                     TEST_PEDIGREE_5,
                                 ),
                             ),