built local dorado container

Author: bwbioinfo

README.md

@@ -1,6 +1,6 @@
 # tool-docker-cwl
 
-This repository provides a [Common Workflow Language (CWL)](https://www.commonwl.org/) tool for running the <tool link> program. The tool is packaged in a Docker container, allowing it to run on any system with Docker or Singularity installed.
+This repository provides a [Common Workflow Language (CWL)](https://www.commonwl.org/) tool for running the [dorado]() program. `dorado` is packaged in a Docker container, allowing it to run on any system with Docker or Singularity installed.
 
 ## Prerequisites
 
@@ -18,7 +18,7 @@ To install and run the tool, follow these steps:
 3. (optional) Build the Docker image by running the following command from the root of the repository:
 
     ```
-    docker build -t <tool-docker-cwl> .
+    docker build -f docker/Dockerfile -t dorado-docker-cwl .
     ```
     OR pull from the built container.
     ```

docker/Dockerfile

@@ -0,0 +1,22 @@
+FROM rockylinux/rockylinux:9
+
+RUN dnf install -y \
+    python3 \
+    python3-pip \
+    python3-devel \
+    gcc \
+    wget \
+    && dnf clean all
+
+RUN pip3 install --upgrade pip
+
+WORKDIR /opt
+
+RUN wget https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.4.3-linux-x64.tar.gz \
+    && tar -xzf dorado-0.4.3-linux-x64.tar.gz \
+    && rm dorado-0.4.3-linux-x64.tar.gz \
+    && mv dorado-0.4.3-linux-x64 dorado
+
+ENV PATH="/opt/dorado/bin:${PATH}"
+
+CMD ["dorado"]