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Change compartment id in core template. Closes ModelSEED#31
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Templates/Core/BiomassCompounds.tsv

+20-20
Original file line numberDiff line numberDiff line change
@@ -1,21 +1,21 @@
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biomass_id id coefficient coefficient_type class linked_compounds compartment
2-
bio1 cpd00002 -1 MULTIPLIER energy cpd00001:-1|cpd00008:-1|cpd00009:-1|cpd00067:1 c0
3-
bio1 cpd11416 1 EXACT energy null c0
4-
bio2 cpd00072 -0.0709 EXACT other null c0
5-
bio2 cpd00101 -0.8977 EXACT other null c0
6-
bio2 cpd00236 -0.8977 EXACT other null c0
7-
bio2 cpd00102 -0.129 EXACT other null c0
8-
bio2 cpd00169 -1.496 EXACT other null c0
9-
bio2 cpd00061 -0.5191 EXACT other null c0
10-
bio2 cpd00020 -2.8328 EXACT other null c0
11-
bio2 cpd00022 -3.7478 EXACT other null c0
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bio2 cpd00032 -1.7867 EXACT other null c0
13-
bio2 cpd00024 -1.0789 EXACT other null c0
14-
bio2 cpd00079 -0.205 EXACT other null c0
15-
bio2 cpd00005 -1.8225 EXACT other cpd00067:-1 c0
16-
bio2 cpd00003 -3.547 EXACT other cpd00067:-1 c0
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bio2 cpd00010 3.7478 EXACT other null c0
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bio2 cpd11416 1 EXACT other null c0
19-
bio2 cpd00006 1.8225 EXACT other null c0
20-
bio2 cpd00004 3.547 EXACT other null c0
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bio2 cpd00002 -1 MULTIPLIER energy cpd00001:-1|cpd00008:-1|cpd00009:-1|cpd00067:1 c0
2+
bio1 cpd00002 -1 MULTIPLIER energy cpd00001:-1|cpd00008:-1|cpd00009:-1|cpd00067:1 c
3+
bio1 cpd11416 1 EXACT energy null c
4+
bio2 cpd00072 -0.0709 EXACT other null c
5+
bio2 cpd00101 -0.8977 EXACT other null c
6+
bio2 cpd00236 -0.8977 EXACT other null c
7+
bio2 cpd00102 -0.129 EXACT other null c
8+
bio2 cpd00169 -1.496 EXACT other null c
9+
bio2 cpd00061 -0.5191 EXACT other null c
10+
bio2 cpd00020 -2.8328 EXACT other null c
11+
bio2 cpd00022 -3.7478 EXACT other null c
12+
bio2 cpd00032 -1.7867 EXACT other null c
13+
bio2 cpd00024 -1.0789 EXACT other null c
14+
bio2 cpd00079 -0.205 EXACT other null c
15+
bio2 cpd00005 -1.8225 EXACT other cpd00067:-1 c
16+
bio2 cpd00003 -3.547 EXACT other cpd00067:-1 c
17+
bio2 cpd00010 3.7478 EXACT other null c
18+
bio2 cpd11416 1 EXACT other null c
19+
bio2 cpd00006 1.8225 EXACT other null c
20+
bio2 cpd00004 3.547 EXACT other null c
21+
bio2 cpd00002 -1 MULTIPLIER energy cpd00001:-1|cpd00008:-1|cpd00009:-1|cpd00067:1 c

Templates/Core/Compartments.tsv

+2-2
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,3 @@
11
index id name hierarchy pH aliases
2-
0 c0 Cytosol 3 7 null
3-
1 e0 Extracellular 0 7 null
2+
0 c Cytosol 3 7 null
3+
1 e Extracellular 0 7 null

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