Open
Description
In the example below, cwltool --validate
should fail, as step first
's that
output has a static format that does not match step second
's other
input.
If steps.first.run.outputs.that.format
was changed from iana:text/plain
to $(inputs.this.format)
then --validate
should also fail as neither iana:text/plain
nor iana:text/rtf
match the required format iana:text/xml
- format checking of static formats
- format checking of pass through CWL expression formats
#!/usr/bin/env cwl-runner
cwlVersion: v1.0
class: Workflow
inputs: []
steps:
first:
run:
class: CommandLineTool
inputs:
this:
type: File
format: [iana:text/plain, iana:text/rtf]
baseCommand: whoami
stdout: stdout.txt
outputs:
that:
type: File
format: iana:text/plain
outputBinding:
glob: stdout.txt
in:
this:
default:
class: File
contents: Foo
format: iana:text/plain
out: [ that ]
second:
run:
class: CommandLineTool
inputs:
other:
type: File
format: iana:text/xml
baseCommand: echo
arguments: [ $(inputs.other.format) ]
outputs:
result: stdout
in:
other: first/that
out: [ result ]
outputs:
result:
type: File
outputSource: second/result
$namespaces: { iana: https://www.iana.org/assignments/media-types/ }