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| 1 | +# template for Poisson parameters file |
| 2 | +gp: |
| 3 | + NINDIVIDUALS: 8000 # 1000 |
| 4 | + NGEN: 200 # 200 |
| 5 | + multi_island: |
| 6 | + num_islands: 1 # 15 |
| 7 | + migration: { "freq": 10, "frac": 0.05 } |
| 8 | + crossover_prob: 0. |
| 9 | + MUTPB: 1. |
| 10 | + frac_elitist: 0. |
| 11 | + min_: 2 |
| 12 | + max_: 5 |
| 13 | + overlapping_generation: True |
| 14 | + validate: False |
| 15 | + penalty: { "method": "length", "reg_param": 0. } |
| 16 | + select: |
| 17 | + # fun: self.tournament_with_elitism |
| 18 | + # kargs: "{'tournsize': 2, 'stochastic_tourn': { 'enabled': True, 'prob': [0.7, 0.3] }}" |
| 19 | + fun: random.sample |
| 20 | + kargs: "{'k': self.NINDIVIDUALS}" |
| 21 | + mutate: |
| 22 | + fun: gp.mixedMutate |
| 23 | + kargs: "{'expr': self.toolbox.expr_mut, 'pset': self.pset, 'prob': [0.7, 0.2, 0.1]}" # string is important |
| 24 | + expr_mut: gp.genHalfAndHalf |
| 25 | + expr_mut_kargs: "{'min_': 1, 'max_': 2}" |
| 26 | + crossover: |
| 27 | + fun: gp.cxOnePoint |
| 28 | + kargs: "{}" |
| 29 | + immigration: { "enabled": False, "freq": 80, "frac": 0.95 } |
| 30 | + primitives: |
| 31 | + imports: { "alpine.gp.numpy_primitives": ["numpy_primitives"] } |
| 32 | + used: [ |
| 33 | + # { "name": "AddF", "dimension": None, "rank": None }, |
| 34 | + # { "name": "SubF", "dimension": None, "rank": None }, |
| 35 | + # { "name": "MulF", "dimension": None, "rank": None }, |
| 36 | + # { "name": "Div", "dimension": None, "rank": None }, |
| 37 | + # { "name": "SquareF", "dimension": None, "rank": None }, |
| 38 | + # { "name": "SinF", "dimension": None, "rank": None }, |
| 39 | + # { "name": "ArcsinF", "dimension": None, "rank": None }, |
| 40 | + # { "name": "CosF", "dimension": None, "rank": None }, |
| 41 | + # { "name": "ArccosF", "dimension": None, "rank": None }, |
| 42 | + # { "name": "ExpF", "dimension": None, "rank": None }, |
| 43 | + # { "name": "LogF", "dimension": None, "rank": None }, |
| 44 | + # { "name": "InvF", "dimension": None, "rank": None }, |
| 45 | + { "name": "add", "dimension": None, "rank": None }, |
| 46 | + { "name": "sub", "dimension": None, "rank": None }, |
| 47 | + { "name": "mul", "dimension": None, "rank": None }, |
| 48 | + { "name": "div", "dimension": None, "rank": None }, |
| 49 | + { "name": "sqrt", "dimension": None, "rank": None }, |
| 50 | + { "name": "sin", "dimension": None, "rank": None }, |
| 51 | + { "name": "square", "dimension": None, "rank": None }, |
| 52 | + # { "name": "arcsin", "dimension": None, "rank": None }, |
| 53 | + { "name": "cos", "dimension": None, "rank": None }, |
| 54 | + # { "name": "arccos", "dimension": None, "rank": None }, |
| 55 | + { "name": "exp", "dimension": None, "rank": None }, |
| 56 | + # { "name": "log", "dimension": None, "rank": None }, |
| 57 | + ] |
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