Merge pull request #16 from deeptools/fix14

Fix #14, use correct pointer type

Author: dpryan79

azure-pipelines.yml

@@ -8,16 +8,14 @@ jobs:
     vmImage: 'ubuntu-latest'
   strategy:
     matrix:
-      Python36:
-        python.version: '3.6'
-      Python37:
-        python.version: '3.7'
       Python38:
         python.version: '3.8'
       Python39:
         python.version: '3.9'
       Python310:
         python.version: '3.10'
+      Python311:
+        python.version: '3.11'
     maxParallel: 5
 
   steps:

lib2bit/2bit.c

@@ -69,7 +69,7 @@ void bytes2bases(char *seq, uint8_t *byte, uint32_t sz, int offset) {
 
     // Deal with the first partial byte
     if(offset != 0) {
-        while(offset < 4) {
+        while(offset < 4 && pos < sz) {
            seq[pos++] = byte2base(foo, offset++);
         }
         if(pos >= sz) return;

py2bit.c

@@ -32,9 +32,9 @@ static PyObject *py2bitOpen(PyObject *self, PyObject *args, PyObject *kwds) {
 }
 
 PyObject *py2bitEnter(pyTwoBit_t *self, PyObject *args) {
-    pyTwoBit_t *pytb = self->tb;
+    TwoBit *tb = self->tb;
 
-    if(!pytb) {
+    if(!tb) {
         PyErr_SetString(PyExc_RuntimeError, "The 2bit file handle is not open!");
         return NULL;
     }

py2bit.h

@@ -1,7 +1,7 @@
 #include <Python.h>
 #include "2bit.h"
 
-#define pyTwoBitVersion "0.3.1"
+#define pyTwoBitVersion "0.3.2"
 
 typedef struct {
     PyObject_HEAD

setup.cfg

@@ -1,2 +1,2 @@
 [metadata]
-description-file = README.md
+description_file = README.md

setup.py

@@ -17,7 +17,7 @@
                     include_dirs = ['lib2bit', sysconfig.get_config_var("INCLUDEPY")])
 
 setup(name = 'py2bit',
-       version = '0.3.1',
+       version = '0.3.2',
        description = 'A package for accessing 2bit files using lib2bit',
        author = "Devon P. Ryan",
        author_email = "dpryan79@gmail.com",