diff --git a/CLOUD_SETUP.md b/CLOUD_SETUP.md new file mode 100644 index 0000000..4a0fb78 --- /dev/null +++ b/CLOUD_SETUP.md @@ -0,0 +1,114 @@ +# Cloud Setup for ISMIP6 Indexing + +This document describes the cloud infrastructure setup required for running the ISMIP6 virtualization pipeline using Lithops on Google Cloud Platform. + +## Prerequisites + +- Google Cloud SDK (`gcloud`) installed and configured +- Access to a GCP project with billing enabled +- Permissions to create service accounts and IAM policies + +## GCP Service Account Setup + +Lithops requires a service account with proper permissions to deploy Cloud Functions and access Cloud Storage. + +### 1. Set Your Project ID + +```bash +export PROJECT_ID=$(gcloud config get-value project) +``` + +For this project, the project ID is: `ds-englacial` + +### 2. Create Service Account + +```bash +gcloud iam service-accounts create lithops-executor \ + --display-name="Lithops Executor Service Account" \ + --project=$PROJECT_ID +``` + +### 3. Grant Required Permissions + +See [Lithops GCP Functions Documentation](https://lithops-cloud.github.io/docs/source/compute_config/gcp_functions.html) for a list of required permissions - THOSE BELOW NEED TO BE UPDATED. + +Grant Cloud Functions Developer role (to deploy and manage serverless functions): + +```bash +gcloud projects add-iam-policy-binding $PROJECT_ID \ + --member="serviceAccount:lithops-executor@${PROJECT_ID}.iam.gserviceaccount.com" \ + --role="roles/cloudfunctions.developer" +``` + +Grant Storage Object Admin role (to read/write GCS buckets): + +```bash +gcloud projects add-iam-policy-binding $PROJECT_ID \ + --member="serviceAccount:lithops-executor@${PROJECT_ID}.iam.gserviceaccount.com" \ + --role="roles/storage.objectAdmin" +``` + +### 4. Download Service Account Key + +```bash +gcloud iam service-accounts keys create ~/lithops-sa-key.json \ + --iam-account=lithops-executor@${PROJECT_ID}.iam.gserviceaccount.com +``` + +This creates a JSON key file at `~/lithops-sa-key.json`. + +## Enable services + +See [Lithops GCP Functions Documentation](https://lithops-cloud.github.io/docs/source/compute_config/gcp_functions.html) for a list of Google Cloud services which need to be enabled. + +## Lithops Configuration + +The `lithops.yaml` configuration file should reference the service account key: + +```yaml +lithops: + backend: gcp_functions + storage: gcp_storage + +gcp: + region: us-west1 + credentials_path: ~/lithops-sa-key.json + +gcp_functions: + region: us-west1 + runtime: ismip6-icechunk + +gcp_storage: + storage_bucket: ismip6-icechunk + region: us-west1 +``` + +### Important Notes + +- **Do NOT use Application Default Credentials**: Lithops requires a service account key file with `client_email` and `token_uri` fields, which ADC doesn't provide +- **Keep the key file secure**: The service account key provides full access to the granted permissions +- **Storage bucket**: The `storage_bucket` parameter specifies where Lithops stores intermediate results and metadata + +## GCS Buckets Used + +- `gs://ismip6`: Source data bucket (public, read-only) +- `gs://ismip6-icechunk`: Target bucket for Icechunk repositories and failure logs + +## Service Account Created + +- **Name**: `lithops-executor` +- **Email**: `lithops-executor@ds-englacial.iam.gserviceaccount.com` +- **Roles**: + - `roles/cloudfunctions.developer` + - `roles/storage.objectAdmin` + - OTHERS/ADD ME +- **Key Location**: `~/lithops-sa-key.json` + +## Build the runtime + +```bash +# lithops runtime delete ismip6-icechunk -c lithops.yaml +lithops runtime build -f requirements.txt ismip6-icechunk -c lithops.yaml +lithops runtime deploy ismip6-icechunk -c lithops.yaml +``` + diff --git a/ICECHUNK_STORE.md b/ICECHUNK_STORE.md new file mode 100644 index 0000000..a1a4668 --- /dev/null +++ b/ICECHUNK_STORE.md @@ -0,0 +1,104 @@ +# Icechunk Store Documentation + +## Overview + +This document describes the Icechunk store created by the `virtualize_with_lithops.py` script for the ISMIP6 dataset. The store contains virtualized references to NetCDF files in Google Cloud Storage, allowing efficient access to the dataset without duplicating the underlying data. + +## Store Location + +- **Bucket**: `gs://ismip6-icechunk` +- **Source Data**: `gs://ismip6/` + +## What is Icechunk and how is it being used + +Icechunk is a transactional storage system for chunked array data. Here we are using it to store metadata that references chunks in remote object storage. In this case, the Google Cloud Storage bucket gs://ismip6, enabling efficient access to large scientific datasets without copying the data. + +## Store Structure + +The Icechunk store is organized hierarchically using the same structure as the `gs://ismip6` source bucket, i.e.: + +``` +{institution}_{model_name}/{experiment}/{variable} +``` + +For example: +- `AWI_ISSM/ctrl/lithk` +- `JPL_ISSM/expAE01/ivol` + +Each path contains a virtual Zarr dataset with metadata pointing to chunks in the original NetCDF files. + +## How virtualize_with_lithops Creates the Store + +### Processing Strategy + +The script uses a three-step approach to build the Icechunk store: + +1. **Build File Index**: Scans the `gs://ismip6/` bucket to identify all available NetCDF files +2. **Group Files**: Groups files by model name and experiment to create logical batches +3. **Process Batches**: For each batch: + - Virtualizes files in parallel using Lithops serverless functions + - Writes successful virtualizations to Icechunk in a single commit + +### Virtualization Process + +#### Step 1: File Virtualization + +For each NetCDF file, the `virtualize_file()` function: + +1. Opens the file using `virtualizarr.open_virtual_dataset()` +2. Loads coordinate variables (`time`, `x`, `y`, `lat`, `lon`, etc.) into memory +3. References data variables virtually (no data is copied) +4. Applies ISMIP6-specific fixes: + - `fix_time_encoding()`: Corrects time coordinate encoding + - `correct_grid_coordinates()`: Fixes grid coordinate metadata +5. Returns the virtual dataset with its hierarchical path + +#### Step 2: Batch Writing + +The `write_batch_to_icechunk()` function: + +1. Opens or creates the Icechunk repository +2. Creates a writable session on the `main` branch +3. Writes all virtual datasets in the batch using `virtual_dataset_to_icechunk()` +4. Commits all changes in a single transaction + +This approach minimizes the number of commits and reduces the risk of conflicts. + +#### Step 3: Parallel Processing (lines 104-217) + +The `process_all_files()`: + +1. Groups files by model and experiment to create batches +2. Uses Lithops to parallelize virtualization within each batch +3. Processes batches sequentially to avoid Icechunk write conflicts +4. Logs any failures to `gs://ismip6-icechunk/failures/` + +## Accessing the Store + +See [notebooks/open_icechunk.ipynb](./notebooks/open_icechunk.ipynb) + +## Commit History + +Each batch write creates a commit with a message like: +``` +Added 5 datasets: AWI_ISSM/ctrl/lithk, AWI_ISSM/ctrl/ivol, AWI_ISSM/ctrl/base, ... +``` + +The commit ID is logged during processing for traceability. + +## Failure Handling + +If virtualization or writing fails for any files, failures are logged to: +``` +gs://ismip6-icechunk/failures/virtualization_failures_YYYYMMDD_HHMMSS.json +``` + +Each failure record includes: +- URL of the failed file +- Error message +- Model name and experiment +- Timestamp + +## Improvements + +* Virtualization is still a bit slow for the entire archive (~6 hours) grouping by model and experiment. Could this be sped up, perhaps virtualizing all files first and / or grouping only by model? diff --git a/lithops.yaml b/lithops.yaml new file mode 100644 index 0000000..f96c060 --- /dev/null +++ b/lithops.yaml @@ -0,0 +1,18 @@ +lithops: + backend: gcp_functions + storage: gcp_storage + data_limit: False + +gcp: + region: us-west1 + credentials_path: /Users/aimeebarciauskas/lithops-sa-key.json + +gcp_functions: + region: us-west1 + runtime: ismip6-icechunk + runtime_memory: 8192 + runtime_timeout: 540 + project_id: ds-englacial + +gcp_storage: + storage_bucket: ismip6-icechunk # Lithops uses storage_bucket, not bucket diff --git a/notebooks/open_icechunk.ipynb b/notebooks/open_icechunk.ipynb new file mode 100644 index 0000000..8c92d73 --- /dev/null +++ b/notebooks/open_icechunk.ipynb @@ -0,0 +1,2424 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "id": "7f3d3038-948d-4846-b2e2-8be2dde9f661", + "metadata": {}, + "source": [ + "# Test opening and reading from the Icechunk Store\n", + "\n", + "## Step 0: Imports" + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "id": "e4ecb459-e6ec-45f6-b291-61f6da476fe4", + "metadata": { + "tags": [] + }, + "outputs": [ + { + "data": { + "text/html": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "application/javascript": "(function(root) {\n function now() {\n return new Date();\n }\n\n const force = true;\n const py_version = '3.8.0'.replace('rc', '-rc.').replace('.dev', '-dev.');\n const reloading = false;\n const Bokeh = root.Bokeh;\n\n // Set a timeout for this load but only if we are not already initializing\n if (typeof (root._bokeh_timeout) === \"undefined\" || (force || !root._bokeh_is_initializing)) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete 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OutputArea) {\n function append_mime(data, metadata, element) {\n // create a DOM node to render to\n var toinsert = this.create_output_subarea(\n metadata,\n CLASS_NAME,\n EXEC_MIME_TYPE\n );\n this.keyboard_manager.register_events(toinsert);\n // Render to node\n var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n render(props, toinsert[0]);\n element.append(toinsert);\n return toinsert\n }\n\n events.on('output_added.OutputArea', handle_add_output);\n events.on('output_updated.OutputArea', handle_update_output);\n events.on('clear_output.CodeCell', handle_clear_output);\n events.on('delete.Cell', handle_clear_output);\n events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n\n OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n safe: true,\n index: 0\n });\n}\n\nif (window.Jupyter !== undefined) {\n try {\n var events = require('base/js/events');\n var OutputArea = require('notebook/js/outputarea').OutputArea;\n if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n register_renderer(events, OutputArea);\n }\n } catch(err) {\n }\n}\n", + "application/vnd.holoviews_load.v0+json": "" + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "application/vnd.holoviews_exec.v0+json": "", + "text/html": [ + "
\n", + "
\n", + "
\n", + "" + ] + }, + "metadata": { + "application/vnd.holoviews_exec.v0+json": { + "id": "8b5b9c35-5767-4e62-8441-6123363c6963" + } + }, + "output_type": "display_data" + }, + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 1, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "import icechunk\n", + "import xarray as xr\n", + "import hvplot.xarray\n", + "import zarr\n", + "\n", + "zarr.config.set({\n", + " 'async.concurrency': 100,\n", + " 'threading.max_workers': None\n", + "})" + ] + }, + { + "cell_type": "markdown", + "id": "13b66768-8874-4970-b33a-b560272b9cc8", + "metadata": {}, + "source": [ + "## Step 1: Setup Icechunk Store" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "98a8fe8a-e6c8-40b7-9124-1e53db69ba89", + "metadata": { + "tags": [] + }, + "outputs": [], + "source": [ + "# When opening the repo, use None for anonymous/public access\n", + "credentials = icechunk.containers_credentials({\n", + " \"gs://ismip6/\": None\n", + "})\n", + "config = icechunk.RepositoryConfig.default()\n", + "\n", + "icechunk_storage = icechunk.gcs_storage(\n", + " bucket=\"ismip6-icechunk\",\n", + " prefix=\"12-07-2025\",\n", + " anonymous=True\n", + ")\n", + "repo = icechunk.Repository.open(icechunk_storage, config, authorize_virtual_chunk_access=credentials)\n", + "session = repo.readonly_session(branch=\"main\")" + ] + }, + { + "cell_type": "markdown", + "id": "3cc576c9-a551-4bce-8e51-b5266bc78af1", + "metadata": {}, + "source": [ + "## Step 3 Test Opening with Zarr" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "08fcb4d9-820d-4d55-bcf9-834dcb8042c5", + "metadata": { + "tags": [] + }, + "outputs": [], + "source": [ + "# opening using Zarr\n", + "root = zarr.open(session.store, mode='r')" + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "id": "b4efec55-7fa2-4713-a858-03715883bbff", + "metadata": { + "tags": [] + }, + "outputs": [ + { + "data": { + "text/html": [ + "
/\n",
+       "├── AWI_PISM1\n",
+       "│   ├── ctrl_proj_std\n",
+       "│   ├── exp01\n",
+       "│   ├── exp02\n",
+       "│   ├── exp03\n",
+       "│   ├── exp04\n",
+       "│   ├── exp05\n",
+       "│   ├── exp06\n",
+       "│   ├── exp07\n",
+       "│   ├── exp08\n",
+       "│   ├── exp09\n",
+       "│   ├── exp10\n",
+       "│   ├── exp11\n",
+       "│   ├── exp12\n",
+       "│   ├── exp13\n",
+       "│   ├── expA1\n",
+       "│   ├── expA2\n",
+       "│   ├── expA3\n",
+       "│   ├── expA4\n",
+       "│   ├── expA5\n",
+       "│   ├── expA6\n",
+       "│   ├── expA7\n",
+       "│   ├── expA8\n",
+       "│   ├── expB1\n",
+       "│   ├── expB10\n",
+       "│   ├── expB2\n",
+       "│   ├── expB3\n",
+       "│   ├── expB4\n",
+       "│   ├── expB5\n",
+       "│   ├── expB6\n",
+       "│   ├── expB7\n",
+       "│   ├── expB8\n",
+       "│   ├── expB9\n",
+       "│   └── hist_std\n",
+       "├── CPOM_BISICLES\n",
+       "│   ├── expT71_08\n",
+       "│   ├── expT73_08\n",
+       "│   └── expTD58_08\n",
+       "├── DOE_MALI\n",
+       "│   ├── ctrl_proj_std\n",
+       "│   ├── exp05\n",
+       "│   ├── exp06\n",
+       "│   ├── exp07\n",
+       "│   ├── exp08\n",
+       "│   ├── exp09\n",
+       "│   ├── exp10\n",
+       "│   ├── exp12\n",
+       "│   └── exp13\n",
+       "├── IMAU_IMAUICE1\n",
+       "│   ├── ctrl_proj_std\n",
+       "│   ├── exp05\n",
+       "│   ├── exp06\n",
+       "│   ├── exp07\n",
+       "│   ├── exp08\n",
+       "│   ├── exp09\n",
+       "│   ├── exp10\n",
+       "│   ├── exp12\n",
+       "│   ├── exp13\n",
+       "│   └── hist_std\n",
+       "├── IMAU_IMAUICE2\n",
+       "│   ├── ctrl_proj_std\n",
+       "│   ├── exp05\n",
+       "│   ├── exp06\n",
+       "│   ├── exp07\n",
+       "│   ├── exp08\n",
+       "│   ├── exp09\n",
+       "│   ├── exp10\n",
+       "│   ├── exp12\n",
+       "│   ├── exp13\n",
+       "│   ├── expA5\n",
+       "│   ├── expA6\n",
+       "│   ├── expA7\n",
+       "│   ├── expA8\n",
+       "│   └── hist_std\n",
+       "├── JPL1_ISSM\n",
+       "│   ├── abmb\n",
+       "│   ├── asmb\n",
+       "│   ├── ctrl\n",
+       "│   ├── ctrl_proj\n",
+       "│   ├── exp05\n",
+       "│   ├── exp06\n",
+       "│   ├── exp07\n",
+       "│   ├── exp07_HighPIGL_08\n",
+       "│   ├── exp07_LowPIGL_08\n",
+       "│   ├── exp07_PIGL_08\n",
+       "│   ├── exp08\n",
+       "│   ├── exp09\n",
+       "│   ├── exp10\n",
+       "│   ├── exp12\n",
+       "│   ├── exp12HighOcean_08\n",
+       "│   ├── exp12HighPIGL_08\n",
+       "│   ├── exp12PIGL_08\n",
+       "│   ├── exp13\n",
+       "│   ├── expA1\n",
+       "│   ├── expA2\n",
+       "│   ├── expA3\n",
+       "│   ├── expA4\n",
+       "│   ├── expB1\n",
+       "│   ├── expB2\n",
+       "│   ├── expB3\n",
+       "│   ├── expB4\n",
+       "│   ├── expB5\n",
+       "│   ├── expC12\n",
+       "│   ├── expC3\n",
+       "│   ├── expC6\n",
+       "│   ├── expC9\n",
+       "│   ├── expD1\n",
+       "│   ├── expD10\n",
+       "│   ├── expD11\n",
+       "│   ├── expD12\n",
+       "│   ├── expD13\n",
+       "│   ├── expD14\n",
+       "│   ├── expD15\n",
+       "│   ├── expD16\n",
+       "│   ├── expD17\n",
+       "│   ├── expD18\n",
+       "│   ├── expD2\n",
+       "│   ├── expD3\n",
+       "│   ├── expD4\n",
+       "│   ├── expD5\n",
+       "│   ├── expD51\n",
+       "│   ├── expD52\n",
+       "│   ├── expD53\n",
+       "│   ├── expD54\n",
+       "│   ├── expD55\n",
+       "│   ├── expD56\n",
+       "│   ├── expD57\n",
+       "│   ├── expD58\n",
+       "│   ├── expD6\n",
+       "│   ├── expD7\n",
+       "│   ├── expD8\n",
+       "│   ├── expD9\n",
+       "│   └── hist\n",
+       "├── LSCE_GRISLI2\n",
+       "│   ├── ctrl_proj_std\n",
+       "│   ├── exp05\n",
+       "│   ├── exp06\n",
+       "│   ├── exp07\n",
+       "│   ├── exp08\n",
+       "│   ├── exp09\n",
+       "│   ├── exp10\n",
+       "│   ├── exp12\n",
+       "│   ├── exp13\n",
+       "│   ├── expA5\n",
+       "│   ├── expA6\n",
+       "│   ├── expA7\n",
+       "│   ├── expA8\n",
+       "│   ├── expB10\n",
+       "│   ├── expB6\n",
+       "│   ├── expB7\n",
+       "│   ├── expB8\n",
+       "│   ├── expB9\n",
+       "│   ├── expC1\n",
+       "│   ├── expC10\n",
+       "│   ├── expC12\n",
+       "│   ├── expC3\n",
+       "│   ├── expC4\n",
+       "│   ├── expC6\n",
+       "│   ├── expC7\n",
+       "│   ├── expC9\n",
+       "│   ├── expD1\n",
+       "│   ├── expD10\n",
+       "│   ├── expD11\n",
+       "│   ├── expD12\n",
+       "│   ├── expD13\n",
+       "│   ├── expD14\n",
+       "│   ├── expD15\n",
+       "│   ├── expD16\n",
+       "│   ├── expD17\n",
+       "│   ├── expD18\n",
+       "│   ├── expD2\n",
+       "│   ├── expD3\n",
+       "│   ├── expD4\n",
+       "│   ├── expD5\n",
+       "│   ├── expD51\n",
+       "│   ├── expD52\n",
+       "│   ├── expD53\n",
+       "│   ├── expD54\n",
+       "│   ├── expD55\n",
+       "│   ├── expD56\n",
+       "│   ├── expD57\n",
+       "│   ├── expD58\n",
+       "│   ├── expD6\n",
+       "│   ├── expD7\n",
+       "│   ├── expD8\n",
+       "│   ├── expD9\n",
+       "│   ├── expE10\n",
+       "│   ├── expE6\n",
+       "│   ├── expE7\n",
+       "│   ├── expE8\n",
+       "│   ├── expE9\n",
+       "│   └── hist_std\n",
+       "├── NCAR_CISM\n",
+       "│   ├── ctrl_proj_open\n",
+       "│   ├── ctrl_proj_std\n",
+       "│   ├── exp01\n",
+       "│   ├── exp02\n",
+       "│   ├── exp03\n",
+       "│   ├── exp04\n",
+       "│   ├── exp05\n",
+       "│   ├── exp06\n",
+       "│   ├── exp07\n",
+       "│   ├── exp08\n",
+       "│   ├── exp09\n",
+       "│   ├── exp10\n",
+       "│   ├── exp13\n",
+       "│   ├── expA1\n",
+       "│   ├── expA2\n",
+       "│   ├── expA3\n",
+       "│   ├── expA4\n",
+       "│   ├── expA5\n",
+       "│   ├── expA6\n",
+       "│   ├── expA7\n",
+       "│   ├── expA8\n",
+       "│   ├── expB1\n",
+       "│   ├── expB10\n",
+       "│   ├── expB2\n",
+       "│   ├── expB3\n",
+       "│   ├── expB4\n",
+       "│   ├── expB5\n",
+       "│   ├── expB6\n",
+       "│   ├── expB7\n",
+       "│   ├── expB8\n",
+       "│   ├── expB9\n",
+       "│   ├── expC1\n",
+       "│   ├── expC10\n",
+       "│   ├── expC10_open\n",
+       "│   ├── expC11\n",
+       "│   ├── expC12\n",
+       "│   ├── expD1\n",
+       "│   ├── expD10\n",
+       "│   ├── expD11\n",
+       "│   ├── expD12\n",
+       "│   ├── expD13\n",
+       "│   ├── expD14\n",
+       "│   ├── expD15\n",
+       "│   ├── expD16\n",
+       "│   ├── expD17\n",
+       "│   ├── expD18\n",
+       "│   ├── expD2\n",
+       "│   ├── expD3\n",
+       "│   ├── expD4\n",
+       "│   ├── expD5\n",
+       "│   ├── expD51\n",
+       "│   ├── expD52\n",
+       "│   ├── expD53\n",
+       "│   ├── expD54\n",
+       "│   ├── expD55\n",
+       "│   ├── expD56\n",
+       "│   ├── expD57\n",
+       "│   ├── expD58\n",
+       "│   ├── hist_open\n",
+       "│   └── hist_std\n",
+       "├── PIK_PISM1\n",
+       "│   ├── ctrl_proj_open\n",
+       "│   ├── exp01\n",
+       "│   ├── exp02\n",
+       "│   ├── exp03\n",
+       "│   ├── exp04\n",
+       "│   └── hist_open\n",
+       "├── PIK_PISM2\n",
+       "│   ├── ctrl_proj_open\n",
+       "│   ├── exp01\n",
+       "│   ├── exp02\n",
+       "│   ├── exp03\n",
+       "│   └── exp04\n",
+       "├── UCIJPL_ISSM\n",
+       "│   ├── ctrl_proj_open\n",
+       "│   ├── ctrl_proj_std\n",
+       "│   ├── exp01\n",
+       "│   ├── exp02\n",
+       "│   ├── exp03\n",
+       "│   ├── exp04\n",
+       "│   ├── exp05\n",
+       "│   ├── exp06\n",
+       "│   ├── exp07\n",
+       "│   ├── exp08\n",
+       "│   ├── exp09\n",
+       "│   ├── exp10\n",
+       "│   ├── exp11\n",
+       "│   ├── exp12\n",
+       "│   ├── exp13\n",
+       "│   ├── expA5\n",
+       "│   ├── expA6\n",
+       "│   ├── expA7\n",
+       "│   ├── expA8\n",
+       "│   ├── expB10\n",
+       "│   ├── expB6\n",
+       "│   ├── expB7\n",
+       "│   ├── expB8\n",
+       "│   ├── expB9\n",
+       "│   ├── expC11\n",
+       "│   ├── expC12\n",
+       "│   ├── expC2\n",
+       "│   ├── expC3\n",
+       "│   ├── expC5\n",
+       "│   ├── expC6\n",
+       "│   ├── expD1\n",
+       "│   ├── expD10\n",
+       "│   ├── expD11\n",
+       "│   ├── expD12\n",
+       "│   ├── expD13\n",
+       "│   ├── expD14\n",
+       "│   ├── expD15\n",
+       "│   ├── expD16\n",
+       "│   ├── expD17\n",
+       "│   ├── expD18\n",
+       "│   ├── expD2\n",
+       "│   ├── expD3\n",
+       "│   ├── expD4\n",
+       "│   ├── expD5\n",
+       "│   ├── expD6\n",
+       "│   ├── expD7\n",
+       "│   ├── expD8\n",
+       "│   ├── expD9\n",
+       "│   ├── hist_open\n",
+       "│   └── hist_std\n",
+       "├── ULB_fETISh_16km\n",
+       "│   ├── ctrl_proj_open\n",
+       "│   ├── ctrl_proj_std\n",
+       "│   ├── exp01\n",
+       "│   ├── exp02\n",
+       "│   ├── exp03\n",
+       "│   ├── exp04\n",
+       "│   ├── exp05\n",
+       "│   ├── exp06\n",
+       "│   ├── exp07\n",
+       "│   ├── exp08\n",
+       "│   ├── exp09\n",
+       "│   ├── exp10\n",
+       "│   ├── exp11\n",
+       "│   ├── exp12\n",
+       "│   ├── exp13\n",
+       "│   ├── expA1\n",
+       "│   ├── expA2\n",
+       "│   ├── expA3\n",
+       "│   ├── expA4\n",
+       "│   ├── expA5\n",
+       "│   ├── expA6\n",
+       "│   ├── expA7\n",
+       "│   ├── expA8\n",
+       "│   ├── hist_open\n",
+       "│   └── hist_std\n",
+       "├── ULB_fETISh_32km\n",
+       "│   ├── ctrl_proj_open\n",
+       "│   ├── ctrl_proj_std\n",
+       "│   ├── exp01\n",
+       "│   ├── exp02\n",
+       "│   ├── exp03\n",
+       "│   ├── exp04\n",
+       "│   ├── exp05\n",
+       "│   ├── exp06\n",
+       "│   ├── exp07\n",
+       "│   ├── exp08\n",
+       "│   ├── exp09\n",
+       "│   ├── exp10\n",
+       "│   ├── exp11\n",
+       "│   ├── exp12\n",
+       "│   ├── exp13\n",
+       "│   ├── expA1\n",
+       "│   ├── expA2\n",
+       "│   ├── expA3\n",
+       "│   ├── expA4\n",
+       "│   ├── expA5\n",
+       "│   ├── expA6\n",
+       "│   ├── expA7\n",
+       "│   ├── expA8\n",
+       "│   ├── hist_open\n",
+       "│   └── hist_std\n",
+       "├── UTAS_ElmerIce\n",
+       "│   ├── ctrl_proj_std\n",
+       "│   ├── exp05\n",
+       "│   ├── exp06\n",
+       "│   └── exp13\n",
+       "├── VUB_AISMPALEO\n",
+       "│   ├── ctrl_proj_std\n",
+       "│   ├── exp05\n",
+       "│   ├── exp06\n",
+       "│   ├── exp07\n",
+       "│   ├── exp08\n",
+       "│   ├── exp09\n",
+       "│   ├── exp10\n",
+       "│   ├── expA5\n",
+       "│   ├── expA6\n",
+       "│   ├── expA7\n",
+       "│   ├── expB6\n",
+       "│   ├── expB7\n",
+       "│   ├── expB8\n",
+       "│   └── hist_std\n",
+       "└── VUW_PISM\n",
+       "    ├── ctrl_proj_open\n",
+       "    ├── exp01\n",
+       "    ├── exp02\n",
+       "    ├── exp03\n",
+       "    ├── exp04\n",
+       "    └── hist_open\n",
+       "
\n" + ], + "text/plain": [ + "\u001b[1m/\u001b[0m\n", + "├── \u001b[1mAWI_PISM1\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_std\u001b[0m\n", + "│ ├── \u001b[1mexp01\u001b[0m\n", + "│ ├── \u001b[1mexp02\u001b[0m\n", + "│ ├── \u001b[1mexp03\u001b[0m\n", + "│ ├── \u001b[1mexp04\u001b[0m\n", + "│ ├── \u001b[1mexp05\u001b[0m\n", + "│ ├── \u001b[1mexp06\u001b[0m\n", + "│ ├── \u001b[1mexp07\u001b[0m\n", + "│ ├── \u001b[1mexp08\u001b[0m\n", + "│ ├── \u001b[1mexp09\u001b[0m\n", + "│ ├── \u001b[1mexp10\u001b[0m\n", + "│ ├── \u001b[1mexp11\u001b[0m\n", + "│ ├── \u001b[1mexp12\u001b[0m\n", + "│ ├── \u001b[1mexp13\u001b[0m\n", + "│ ├── \u001b[1mexpA1\u001b[0m\n", + "│ ├── \u001b[1mexpA2\u001b[0m\n", + "│ ├── \u001b[1mexpA3\u001b[0m\n", + "│ ├── \u001b[1mexpA4\u001b[0m\n", + "│ ├── \u001b[1mexpA5\u001b[0m\n", + "│ ├── \u001b[1mexpA6\u001b[0m\n", + "│ ├── \u001b[1mexpA7\u001b[0m\n", + "│ ├── \u001b[1mexpA8\u001b[0m\n", + "│ ├── \u001b[1mexpB1\u001b[0m\n", + "│ ├── \u001b[1mexpB10\u001b[0m\n", + "│ ├── \u001b[1mexpB2\u001b[0m\n", + "│ ├── \u001b[1mexpB3\u001b[0m\n", + "│ ├── \u001b[1mexpB4\u001b[0m\n", + "│ ├── \u001b[1mexpB5\u001b[0m\n", + "│ ├── \u001b[1mexpB6\u001b[0m\n", + "│ ├── \u001b[1mexpB7\u001b[0m\n", + "│ ├── \u001b[1mexpB8\u001b[0m\n", + "│ ├── \u001b[1mexpB9\u001b[0m\n", + "│ └── \u001b[1mhist_std\u001b[0m\n", + "├── \u001b[1mCPOM_BISICLES\u001b[0m\n", + "│ ├── \u001b[1mexpT71_08\u001b[0m\n", + "│ ├── \u001b[1mexpT73_08\u001b[0m\n", + "│ └── \u001b[1mexpTD58_08\u001b[0m\n", + "├── \u001b[1mDOE_MALI\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_std\u001b[0m\n", + "│ ├── \u001b[1mexp05\u001b[0m\n", + "│ ├── \u001b[1mexp06\u001b[0m\n", + "│ ├── \u001b[1mexp07\u001b[0m\n", + "│ ├── \u001b[1mexp08\u001b[0m\n", + "│ ├── \u001b[1mexp09\u001b[0m\n", + "│ ├── \u001b[1mexp10\u001b[0m\n", + "│ ├── \u001b[1mexp12\u001b[0m\n", + "│ └── \u001b[1mexp13\u001b[0m\n", + "├── \u001b[1mIMAU_IMAUICE1\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_std\u001b[0m\n", + "│ ├── \u001b[1mexp05\u001b[0m\n", + "│ ├── \u001b[1mexp06\u001b[0m\n", + "│ ├── \u001b[1mexp07\u001b[0m\n", + "│ ├── \u001b[1mexp08\u001b[0m\n", + "│ ├── \u001b[1mexp09\u001b[0m\n", + "│ ├── \u001b[1mexp10\u001b[0m\n", + "│ ├── \u001b[1mexp12\u001b[0m\n", + "│ ├── \u001b[1mexp13\u001b[0m\n", + "│ └── \u001b[1mhist_std\u001b[0m\n", + "├── \u001b[1mIMAU_IMAUICE2\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_std\u001b[0m\n", + "│ ├── \u001b[1mexp05\u001b[0m\n", + "│ ├── \u001b[1mexp06\u001b[0m\n", + "│ ├── \u001b[1mexp07\u001b[0m\n", + "│ ├── \u001b[1mexp08\u001b[0m\n", + "│ ├── \u001b[1mexp09\u001b[0m\n", + "│ ├── \u001b[1mexp10\u001b[0m\n", + "│ ├── \u001b[1mexp12\u001b[0m\n", + "│ ├── \u001b[1mexp13\u001b[0m\n", + "│ ├── \u001b[1mexpA5\u001b[0m\n", + "│ ├── \u001b[1mexpA6\u001b[0m\n", + "│ ├── \u001b[1mexpA7\u001b[0m\n", + "│ ├── \u001b[1mexpA8\u001b[0m\n", + "│ └── \u001b[1mhist_std\u001b[0m\n", + "├── \u001b[1mJPL1_ISSM\u001b[0m\n", + "│ ├── \u001b[1mabmb\u001b[0m\n", + "│ ├── \u001b[1masmb\u001b[0m\n", + "│ ├── \u001b[1mctrl\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj\u001b[0m\n", + "│ ├── \u001b[1mexp05\u001b[0m\n", + "│ ├── \u001b[1mexp06\u001b[0m\n", + "│ ├── \u001b[1mexp07\u001b[0m\n", + "│ ├── \u001b[1mexp07_HighPIGL_08\u001b[0m\n", + "│ ├── \u001b[1mexp07_LowPIGL_08\u001b[0m\n", + "│ ├── \u001b[1mexp07_PIGL_08\u001b[0m\n", + "│ ├── \u001b[1mexp08\u001b[0m\n", + "│ ├── \u001b[1mexp09\u001b[0m\n", + "│ ├── \u001b[1mexp10\u001b[0m\n", + "│ ├── \u001b[1mexp12\u001b[0m\n", + "│ ├── \u001b[1mexp12HighOcean_08\u001b[0m\n", + "│ ├── \u001b[1mexp12HighPIGL_08\u001b[0m\n", + "│ ├── \u001b[1mexp12PIGL_08\u001b[0m\n", + "│ ├── \u001b[1mexp13\u001b[0m\n", + "│ ├── \u001b[1mexpA1\u001b[0m\n", + "│ ├── \u001b[1mexpA2\u001b[0m\n", + "│ ├── \u001b[1mexpA3\u001b[0m\n", + "│ ├── \u001b[1mexpA4\u001b[0m\n", + "│ ├── \u001b[1mexpB1\u001b[0m\n", + "│ ├── \u001b[1mexpB2\u001b[0m\n", + "│ ├── \u001b[1mexpB3\u001b[0m\n", + "│ ├── \u001b[1mexpB4\u001b[0m\n", + "│ ├── \u001b[1mexpB5\u001b[0m\n", + "│ ├── \u001b[1mexpC12\u001b[0m\n", + "│ ├── \u001b[1mexpC3\u001b[0m\n", + "│ ├── \u001b[1mexpC6\u001b[0m\n", + "│ ├── \u001b[1mexpC9\u001b[0m\n", + "│ ├── \u001b[1mexpD1\u001b[0m\n", + "│ ├── \u001b[1mexpD10\u001b[0m\n", + "│ ├── \u001b[1mexpD11\u001b[0m\n", + "│ ├── \u001b[1mexpD12\u001b[0m\n", + "│ ├── \u001b[1mexpD13\u001b[0m\n", + "│ ├── \u001b[1mexpD14\u001b[0m\n", + "│ ├── \u001b[1mexpD15\u001b[0m\n", + "│ ├── \u001b[1mexpD16\u001b[0m\n", + "│ ├── \u001b[1mexpD17\u001b[0m\n", + "│ ├── \u001b[1mexpD18\u001b[0m\n", + "│ ├── \u001b[1mexpD2\u001b[0m\n", + "│ ├── \u001b[1mexpD3\u001b[0m\n", + "│ ├── \u001b[1mexpD4\u001b[0m\n", + "│ ├── \u001b[1mexpD5\u001b[0m\n", + "│ ├── \u001b[1mexpD51\u001b[0m\n", + "│ ├── \u001b[1mexpD52\u001b[0m\n", + "│ ├── \u001b[1mexpD53\u001b[0m\n", + "│ ├── \u001b[1mexpD54\u001b[0m\n", + "│ ├── \u001b[1mexpD55\u001b[0m\n", + "│ ├── \u001b[1mexpD56\u001b[0m\n", + "│ ├── \u001b[1mexpD57\u001b[0m\n", + "│ ├── \u001b[1mexpD58\u001b[0m\n", + "│ ├── \u001b[1mexpD6\u001b[0m\n", + "│ ├── \u001b[1mexpD7\u001b[0m\n", + "│ ├── \u001b[1mexpD8\u001b[0m\n", + "│ ├── \u001b[1mexpD9\u001b[0m\n", + "│ └── \u001b[1mhist\u001b[0m\n", + "├── \u001b[1mLSCE_GRISLI2\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_std\u001b[0m\n", + "│ ├── \u001b[1mexp05\u001b[0m\n", + "│ ├── \u001b[1mexp06\u001b[0m\n", + "│ ├── \u001b[1mexp07\u001b[0m\n", + "│ ├── \u001b[1mexp08\u001b[0m\n", + "│ ├── \u001b[1mexp09\u001b[0m\n", + "│ ├── \u001b[1mexp10\u001b[0m\n", + "│ ├── \u001b[1mexp12\u001b[0m\n", + "│ ├── \u001b[1mexp13\u001b[0m\n", + "│ ├── \u001b[1mexpA5\u001b[0m\n", + "│ ├── \u001b[1mexpA6\u001b[0m\n", + "│ ├── \u001b[1mexpA7\u001b[0m\n", + "│ ├── \u001b[1mexpA8\u001b[0m\n", + "│ ├── \u001b[1mexpB10\u001b[0m\n", + "│ ├── \u001b[1mexpB6\u001b[0m\n", + "│ ├── \u001b[1mexpB7\u001b[0m\n", + "│ ├── \u001b[1mexpB8\u001b[0m\n", + "│ ├── \u001b[1mexpB9\u001b[0m\n", + "│ ├── \u001b[1mexpC1\u001b[0m\n", + "│ ├── \u001b[1mexpC10\u001b[0m\n", + "│ ├── \u001b[1mexpC12\u001b[0m\n", + "│ ├── \u001b[1mexpC3\u001b[0m\n", + "│ ├── \u001b[1mexpC4\u001b[0m\n", + "│ ├── \u001b[1mexpC6\u001b[0m\n", + "│ ├── \u001b[1mexpC7\u001b[0m\n", + "│ ├── \u001b[1mexpC9\u001b[0m\n", + "│ ├── \u001b[1mexpD1\u001b[0m\n", + "│ ├── \u001b[1mexpD10\u001b[0m\n", + "│ ├── \u001b[1mexpD11\u001b[0m\n", + "│ ├── \u001b[1mexpD12\u001b[0m\n", + "│ ├── \u001b[1mexpD13\u001b[0m\n", + "│ ├── \u001b[1mexpD14\u001b[0m\n", + "│ ├── \u001b[1mexpD15\u001b[0m\n", + "│ ├── \u001b[1mexpD16\u001b[0m\n", + "│ ├── \u001b[1mexpD17\u001b[0m\n", + "│ ├── \u001b[1mexpD18\u001b[0m\n", + "│ ├── \u001b[1mexpD2\u001b[0m\n", + "│ ├── \u001b[1mexpD3\u001b[0m\n", + "│ ├── \u001b[1mexpD4\u001b[0m\n", + "│ ├── \u001b[1mexpD5\u001b[0m\n", + "│ ├── \u001b[1mexpD51\u001b[0m\n", + "│ ├── \u001b[1mexpD52\u001b[0m\n", + "│ ├── \u001b[1mexpD53\u001b[0m\n", + "│ ├── \u001b[1mexpD54\u001b[0m\n", + "│ ├── \u001b[1mexpD55\u001b[0m\n", + "│ ├── \u001b[1mexpD56\u001b[0m\n", + "│ ├── \u001b[1mexpD57\u001b[0m\n", + "│ ├── \u001b[1mexpD58\u001b[0m\n", + "│ ├── \u001b[1mexpD6\u001b[0m\n", + "│ ├── \u001b[1mexpD7\u001b[0m\n", + "│ ├── \u001b[1mexpD8\u001b[0m\n", + "│ ├── \u001b[1mexpD9\u001b[0m\n", + "│ ├── \u001b[1mexpE10\u001b[0m\n", + "│ ├── \u001b[1mexpE6\u001b[0m\n", + "│ ├── \u001b[1mexpE7\u001b[0m\n", + "│ ├── \u001b[1mexpE8\u001b[0m\n", + "│ ├── \u001b[1mexpE9\u001b[0m\n", + "│ └── \u001b[1mhist_std\u001b[0m\n", + "├── \u001b[1mNCAR_CISM\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_open\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_std\u001b[0m\n", + "│ ├── \u001b[1mexp01\u001b[0m\n", + "│ ├── \u001b[1mexp02\u001b[0m\n", + "│ ├── \u001b[1mexp03\u001b[0m\n", + "│ ├── \u001b[1mexp04\u001b[0m\n", + "│ ├── \u001b[1mexp05\u001b[0m\n", + "│ ├── \u001b[1mexp06\u001b[0m\n", + "│ ├── \u001b[1mexp07\u001b[0m\n", + "│ ├── \u001b[1mexp08\u001b[0m\n", + "│ ├── \u001b[1mexp09\u001b[0m\n", + "│ ├── \u001b[1mexp10\u001b[0m\n", + "│ ├── \u001b[1mexp13\u001b[0m\n", + "│ ├── \u001b[1mexpA1\u001b[0m\n", + "│ ├── \u001b[1mexpA2\u001b[0m\n", + "│ ├── \u001b[1mexpA3\u001b[0m\n", + "│ ├── \u001b[1mexpA4\u001b[0m\n", + "│ ├── \u001b[1mexpA5\u001b[0m\n", + "│ ├── \u001b[1mexpA6\u001b[0m\n", + "│ ├── \u001b[1mexpA7\u001b[0m\n", + "│ ├── \u001b[1mexpA8\u001b[0m\n", + "│ ├── \u001b[1mexpB1\u001b[0m\n", + "│ ├── \u001b[1mexpB10\u001b[0m\n", + "│ ├── \u001b[1mexpB2\u001b[0m\n", + "│ ├── \u001b[1mexpB3\u001b[0m\n", + "│ ├── \u001b[1mexpB4\u001b[0m\n", + "│ ├── \u001b[1mexpB5\u001b[0m\n", + "│ ├── \u001b[1mexpB6\u001b[0m\n", + "│ ├── \u001b[1mexpB7\u001b[0m\n", + "│ ├── \u001b[1mexpB8\u001b[0m\n", + "│ ├── \u001b[1mexpB9\u001b[0m\n", + "│ ├── \u001b[1mexpC1\u001b[0m\n", + "│ ├── \u001b[1mexpC10\u001b[0m\n", + "│ ├── \u001b[1mexpC10_open\u001b[0m\n", + "│ ├── \u001b[1mexpC11\u001b[0m\n", + "│ ├── \u001b[1mexpC12\u001b[0m\n", + "│ ├── \u001b[1mexpD1\u001b[0m\n", + "│ ├── \u001b[1mexpD10\u001b[0m\n", + "│ ├── \u001b[1mexpD11\u001b[0m\n", + "│ ├── \u001b[1mexpD12\u001b[0m\n", + "│ ├── \u001b[1mexpD13\u001b[0m\n", + "│ ├── \u001b[1mexpD14\u001b[0m\n", + "│ ├── \u001b[1mexpD15\u001b[0m\n", + "│ ├── \u001b[1mexpD16\u001b[0m\n", + "│ ├── \u001b[1mexpD17\u001b[0m\n", + "│ ├── \u001b[1mexpD18\u001b[0m\n", + "│ ├── \u001b[1mexpD2\u001b[0m\n", + "│ ├── \u001b[1mexpD3\u001b[0m\n", + "│ ├── \u001b[1mexpD4\u001b[0m\n", + "│ ├── \u001b[1mexpD5\u001b[0m\n", + "│ ├── \u001b[1mexpD51\u001b[0m\n", + "│ ├── \u001b[1mexpD52\u001b[0m\n", + "│ ├── \u001b[1mexpD53\u001b[0m\n", + "│ ├── \u001b[1mexpD54\u001b[0m\n", + "│ ├── \u001b[1mexpD55\u001b[0m\n", + "│ ├── \u001b[1mexpD56\u001b[0m\n", + "│ ├── \u001b[1mexpD57\u001b[0m\n", + "│ ├── \u001b[1mexpD58\u001b[0m\n", + "│ ├── \u001b[1mhist_open\u001b[0m\n", + "│ └── \u001b[1mhist_std\u001b[0m\n", + "├── \u001b[1mPIK_PISM1\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_open\u001b[0m\n", + "│ ├── \u001b[1mexp01\u001b[0m\n", + "│ ├── \u001b[1mexp02\u001b[0m\n", + "│ ├── \u001b[1mexp03\u001b[0m\n", + "│ ├── \u001b[1mexp04\u001b[0m\n", + "│ └── \u001b[1mhist_open\u001b[0m\n", + "├── \u001b[1mPIK_PISM2\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_open\u001b[0m\n", + "│ ├── \u001b[1mexp01\u001b[0m\n", + "│ ├── \u001b[1mexp02\u001b[0m\n", + "│ ├── \u001b[1mexp03\u001b[0m\n", + "│ └── \u001b[1mexp04\u001b[0m\n", + "├── \u001b[1mUCIJPL_ISSM\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_open\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_std\u001b[0m\n", + "│ ├── \u001b[1mexp01\u001b[0m\n", + "│ ├── \u001b[1mexp02\u001b[0m\n", + "│ ├── \u001b[1mexp03\u001b[0m\n", + "│ ├── \u001b[1mexp04\u001b[0m\n", + "│ ├── \u001b[1mexp05\u001b[0m\n", + "│ ├── \u001b[1mexp06\u001b[0m\n", + "│ ├── \u001b[1mexp07\u001b[0m\n", + "│ ├── \u001b[1mexp08\u001b[0m\n", + "│ ├── \u001b[1mexp09\u001b[0m\n", + "│ ├── \u001b[1mexp10\u001b[0m\n", + "│ ├── \u001b[1mexp11\u001b[0m\n", + "│ ├── \u001b[1mexp12\u001b[0m\n", + "│ ├── \u001b[1mexp13\u001b[0m\n", + "│ ├── \u001b[1mexpA5\u001b[0m\n", + "│ ├── \u001b[1mexpA6\u001b[0m\n", + "│ ├── \u001b[1mexpA7\u001b[0m\n", + "│ ├── \u001b[1mexpA8\u001b[0m\n", + "│ ├── \u001b[1mexpB10\u001b[0m\n", + "│ ├── \u001b[1mexpB6\u001b[0m\n", + "│ ├── \u001b[1mexpB7\u001b[0m\n", + "│ ├── \u001b[1mexpB8\u001b[0m\n", + "│ ├── \u001b[1mexpB9\u001b[0m\n", + "│ ├── \u001b[1mexpC11\u001b[0m\n", + "│ ├── \u001b[1mexpC12\u001b[0m\n", + "│ ├── \u001b[1mexpC2\u001b[0m\n", + "│ ├── \u001b[1mexpC3\u001b[0m\n", + "│ ├── \u001b[1mexpC5\u001b[0m\n", + "│ ├── \u001b[1mexpC6\u001b[0m\n", + "│ ├── \u001b[1mexpD1\u001b[0m\n", + "│ ├── \u001b[1mexpD10\u001b[0m\n", + "│ ├── \u001b[1mexpD11\u001b[0m\n", + "│ ├── \u001b[1mexpD12\u001b[0m\n", + "│ ├── \u001b[1mexpD13\u001b[0m\n", + "│ ├── \u001b[1mexpD14\u001b[0m\n", + "│ ├── \u001b[1mexpD15\u001b[0m\n", + "│ ├── \u001b[1mexpD16\u001b[0m\n", + "│ ├── \u001b[1mexpD17\u001b[0m\n", + "│ ├── \u001b[1mexpD18\u001b[0m\n", + "│ ├── \u001b[1mexpD2\u001b[0m\n", + "│ ├── \u001b[1mexpD3\u001b[0m\n", + "│ ├── \u001b[1mexpD4\u001b[0m\n", + "│ ├── \u001b[1mexpD5\u001b[0m\n", + "│ ├── \u001b[1mexpD6\u001b[0m\n", + "│ ├── \u001b[1mexpD7\u001b[0m\n", + "│ ├── \u001b[1mexpD8\u001b[0m\n", + "│ ├── \u001b[1mexpD9\u001b[0m\n", + "│ ├── \u001b[1mhist_open\u001b[0m\n", + "│ └── \u001b[1mhist_std\u001b[0m\n", + "├── \u001b[1mULB_fETISh_16km\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_open\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_std\u001b[0m\n", + "│ ├── \u001b[1mexp01\u001b[0m\n", + "│ ├── \u001b[1mexp02\u001b[0m\n", + "│ ├── \u001b[1mexp03\u001b[0m\n", + "│ ├── \u001b[1mexp04\u001b[0m\n", + "│ ├── \u001b[1mexp05\u001b[0m\n", + "│ ├── \u001b[1mexp06\u001b[0m\n", + "│ ├── \u001b[1mexp07\u001b[0m\n", + "│ ├── \u001b[1mexp08\u001b[0m\n", + "│ ├── \u001b[1mexp09\u001b[0m\n", + "│ ├── \u001b[1mexp10\u001b[0m\n", + "│ ├── \u001b[1mexp11\u001b[0m\n", + "│ ├── \u001b[1mexp12\u001b[0m\n", + "│ ├── \u001b[1mexp13\u001b[0m\n", + "│ ├── \u001b[1mexpA1\u001b[0m\n", + "│ ├── \u001b[1mexpA2\u001b[0m\n", + "│ ├── \u001b[1mexpA3\u001b[0m\n", + "│ ├── \u001b[1mexpA4\u001b[0m\n", + "│ ├── \u001b[1mexpA5\u001b[0m\n", + "│ ├── \u001b[1mexpA6\u001b[0m\n", + "│ ├── \u001b[1mexpA7\u001b[0m\n", + "│ ├── \u001b[1mexpA8\u001b[0m\n", + "│ ├── \u001b[1mhist_open\u001b[0m\n", + "│ └── \u001b[1mhist_std\u001b[0m\n", + "├── \u001b[1mULB_fETISh_32km\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_open\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_std\u001b[0m\n", + "│ ├── \u001b[1mexp01\u001b[0m\n", + "│ ├── \u001b[1mexp02\u001b[0m\n", + "│ ├── \u001b[1mexp03\u001b[0m\n", + "│ ├── \u001b[1mexp04\u001b[0m\n", + "│ ├── \u001b[1mexp05\u001b[0m\n", + "│ ├── \u001b[1mexp06\u001b[0m\n", + "│ ├── \u001b[1mexp07\u001b[0m\n", + "│ ├── \u001b[1mexp08\u001b[0m\n", + "│ ├── \u001b[1mexp09\u001b[0m\n", + "│ ├── \u001b[1mexp10\u001b[0m\n", + "│ ├── \u001b[1mexp11\u001b[0m\n", + "│ ├── \u001b[1mexp12\u001b[0m\n", + "│ ├── \u001b[1mexp13\u001b[0m\n", + "│ ├── \u001b[1mexpA1\u001b[0m\n", + "│ ├── \u001b[1mexpA2\u001b[0m\n", + "│ ├── \u001b[1mexpA3\u001b[0m\n", + "│ ├── \u001b[1mexpA4\u001b[0m\n", + "│ ├── \u001b[1mexpA5\u001b[0m\n", + "│ ├── \u001b[1mexpA6\u001b[0m\n", + "│ ├── \u001b[1mexpA7\u001b[0m\n", + "│ ├── \u001b[1mexpA8\u001b[0m\n", + "│ ├── \u001b[1mhist_open\u001b[0m\n", + "│ └── \u001b[1mhist_std\u001b[0m\n", + "├── \u001b[1mUTAS_ElmerIce\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_std\u001b[0m\n", + "│ ├── \u001b[1mexp05\u001b[0m\n", + "│ ├── \u001b[1mexp06\u001b[0m\n", + "│ └── \u001b[1mexp13\u001b[0m\n", + "├── \u001b[1mVUB_AISMPALEO\u001b[0m\n", + "│ ├── \u001b[1mctrl_proj_std\u001b[0m\n", + "│ ├── \u001b[1mexp05\u001b[0m\n", + "│ ├── \u001b[1mexp06\u001b[0m\n", + "│ ├── \u001b[1mexp07\u001b[0m\n", + "│ ├── \u001b[1mexp08\u001b[0m\n", + "│ ├── \u001b[1mexp09\u001b[0m\n", + "│ ├── \u001b[1mexp10\u001b[0m\n", + "│ ├── \u001b[1mexpA5\u001b[0m\n", + "│ ├── \u001b[1mexpA6\u001b[0m\n", + "│ ├── \u001b[1mexpA7\u001b[0m\n", + "│ ├── \u001b[1mexpB6\u001b[0m\n", + "│ ├── \u001b[1mexpB7\u001b[0m\n", + "│ ├── \u001b[1mexpB8\u001b[0m\n", + "│ └── \u001b[1mhist_std\u001b[0m\n", + "└── \u001b[1mVUW_PISM\u001b[0m\n", + " ├── \u001b[1mctrl_proj_open\u001b[0m\n", + " ├── \u001b[1mexp01\u001b[0m\n", + " ├── \u001b[1mexp02\u001b[0m\n", + " ├── \u001b[1mexp03\u001b[0m\n", + " ├── \u001b[1mexp04\u001b[0m\n", + " └── \u001b[1mhist_open\u001b[0m\n" + ] + }, + "execution_count": 4, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "root.tree(level=1)" + ] + }, + { + "cell_type": "markdown", + "id": "ce35d385-ae76-41b9-aa35-ed6daa6dcea5", + "metadata": { + "tags": [] + }, + "source": [ + "### Step 3a: Test reading data" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "id": "1a80f13b-2294-4ed8-8d2c-c6a7bc54f91e", + "metadata": { + "tags": [] + }, + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/aimeebarciauskas/github/ismip-indexing/.venv/lib/python3.13/site-packages/zarr/codecs/numcodecs/_codecs.py:141: ZarrUserWarning: Numcodecs codecs are not in the Zarr version 3 specification and may not be supported by other zarr implementations.\n", + " super().__init__(**codec_config)\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "[5478.6328125 5843.875 6209.1171875 6574.359375 6939.6015625\n", + " 7304.84423611 7670.08642361 8035.32861111 8400.5703125 8765.8125 ]\n", + "[-3040000. -3032000. -3024000. -3016000. -3008000. -3000000. -2992000.\n", + " -2984000. -2976000. -2968000.]\n", + "[-3040000. -3032000. -3024000. -3016000. -3008000. -3000000. -2992000.\n", + " -2984000. -2976000. -2968000.]\n", + "[-9.e+33 -9.e+33 -9.e+33 -9.e+33 -9.e+33 -9.e+33 -9.e+33 -9.e+33 -9.e+33\n", + " -9.e+33]\n" + ] + } + ], + "source": [ + "# Get the array\n", + "prefix = '/VUB_AISMPALEO/ctrl_proj_std/base'\n", + "time_arr, x_arr, y_arr = root[f'{prefix}/time'], root[f'{prefix}/x'], root[f'{prefix}/y']\n", + "\n", + "# Check the array's attributes\n", + "print(time_arr[0:10])\n", + "print(x_arr[0:10])\n", + "print(y_arr[0:10])\n", + "\n", + "# Get the array\n", + "base_arr = root['/VUB_AISMPALEO/ctrl_proj_std/base/base']\n", + "\n", + "# Check the array's attributes\n", + "print(base_arr[0,0:10,0])" + ] + }, + { + "cell_type": "markdown", + "id": "a4a0c7ee-f748-4a80-aec1-eb9463f3916f", + "metadata": {}, + "source": [ + "## Step 4: Test Open + Plot with `xarray.open_datatree`\n", + "\n", + "Note: It is not recommended to do this with the entire datatree." + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "id": "16a6a18e-9f8a-420f-a0b9-31d630280cda", + "metadata": { + "tags": [] + }, + "outputs": [], + "source": [ + "dt = xr.open_datatree(\n", + " session.store,\n", + " engine=\"zarr\",\n", + " consolidated=False,\n", + " group='CPOM_BISICLES/expT71_08'\n", + ")" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "id": "d5edc9c7-637c-4c21-af9e-a5e62748dd85", + "metadata": { + "tags": [] + }, + "outputs": [ + { + "data": { + "text/html": [ + "
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<xarray.DataTree>\n",
+       "Group: /\n",
+       "├── Group: /yvelmean\n",
+       "│       Dimensions:   (time: 90, x: 761, y: 761)\n",
+       "│       Coordinates:\n",
+       "│         * time      (time) float64 720B 365.2 730.5 1.096e+03 ... 3.251e+04 3.287e+04\n",
+       "│         * x         (x) float64 6kB -3.04e+06 -3.032e+06 ... 3.032e+06 3.04e+06\n",
+       "│         * y         (y) float64 6kB -3.04e+06 -3.032e+06 ... 3.032e+06 3.04e+06\n",
+       "│           lat       (x, y) float64 5MB ...\n",
+       "│           lon       (x, y) float64 5MB ...\n",
+       "│       Data variables:\n",
+       "│           yvelmean  (time, x, y) float64 417MB ...\n",
+       "│       Attributes:\n",
+       "│           info:      Model CPOM BISICLES\n",
+       "│           history:   bisiclesISMIPVarExtractorV2.py\n",
+       "│           meshName:  6080x6080km_8km_Antarctic_stereo\n",
+       "├── Group: /dlithkdt\n",
+       "│       Dimensions:   (time: 91, x: 761, y: 761)\n",
+       "│       Coordinates:\n",
+       "│         * time      (time) float64 728B 365.2 730.5 1.096e+03 ... 3.287e+04 3.324e+04\n",
+       "│         * x         (x) float64 6kB -3.04e+06 -3.032e+06 ... 3.032e+06 3.04e+06\n",
+       "│         * y         (y) float64 6kB -3.04e+06 -3.032e+06 ... 3.032e+06 3.04e+06\n",
+       "│           lon       (x, y) float64 5MB ...\n",
+       "│           lat       (x, y) float64 5MB ...\n",
+       "│       Data variables:\n",
+       "│           dlithkdt  (time, x, y) float64 422MB ...\n",
+       "│       Attributes:\n",
+       "│           info:      Model CPOM BISICLES\n",
+       "│           history:   bisiclesISMIPVarExtractorV2.py\n",
+       "│           meshName:  6080x6080km_8km_Antarctic_stereo\n",
+       "├── Group: /libmassbfgr\n",
+       "│       Dimensions:      (time: 91, x: 761, y: 761)\n",
+       "│       Coordinates:\n",
+       "│         * time         (time) float64 728B 365.2 730.5 ... 3.287e+04 3.324e+04\n",
+       "│         * x            (x) float64 6kB -3.04e+06 -3.032e+06 ... 3.032e+06 3.04e+06\n",
+       "│         * y            (y) float64 6kB -3.04e+06 -3.032e+06 ... 3.032e+06 3.04e+06\n",
+       "│           lat          (x, y) float64 5MB ...\n",
+       "│           lon          (x, y) float64 5MB ...\n",
+       "│       Data variables:\n",
+       "│           libmassbfgr  (time, x, y) float64 422MB ...\n",
+       "│       Attributes:\n",
+       "│           info:      Model CPOM BISICLES\n",
+       "│           history:   bisiclesISMIPVarExtractorV2.py\n",
+       "│           meshName:  6080x6080km_8km_Antarctic_stereo\n",
+       "...\n",
+       "├── Group: /libmassbffl\n",
+       "│       Dimensions:      (time: 91, x: 761, y: 761)\n",
+       "│       Coordinates:\n",
+       "│         * time         (time) float64 728B 365.2 730.5 ... 3.287e+04 3.324e+04\n",
+       "│         * x            (x) float64 6kB -3.04e+06 -3.032e+06 ... 3.032e+06 3.04e+06\n",
+       "│         * y            (y) float64 6kB -3.04e+06 -3.032e+06 ... 3.032e+06 3.04e+06\n",
+       "│           lat          (x, y) float64 5MB ...\n",
+       "│           lon          (x, y) float64 5MB ...\n",
+       "│       Data variables:\n",
+       "│           libmassbffl  (time, x, y) float64 422MB ...\n",
+       "│       Attributes:\n",
+       "│           info:      Model CPOM BISICLES\n",
+       "│           history:   bisiclesISMIPVarExtractorV2.py\n",
+       "│           meshName:  6080x6080km_8km_Antarctic_stereo\n",
+       "├── Group: /tendlifmassbf\n",
+       "│       Dimensions:        (time: 91)\n",
+       "│       Coordinates:\n",
+       "│         * time           (time) float64 728B 2.318e-310 2.318e-310 ... 2.592e-165\n",
+       "│       Data variables:\n",
+       "│           tendlifmassbf  (time) float64 728B ...\n",
+       "│       Attributes:\n",
+       "│           info:     Model CPOM BISICLES\n",
+       "└── Group: /sftgif\n",
+       "        Dimensions:  (time: 90, x: 761, y: 761)\n",
+       "        Coordinates:\n",
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+ "vmin, vmax = base_array.quantile([0.01, 0.99]).values\n", + "vmin, vmax" + ] + }, + { + "cell_type": "code", + "execution_count": 10, + "id": "4a19f32f-d068-4d11-9077-c4825413e7ee", + "metadata": { + "tags": [] + }, + "outputs": [ + { + "data": { + "application/vnd.jupyter.widget-view+json": { + "model_id": "5834b6150ec444de96800280fc1750bf", + "version_major": 2, + "version_minor": 0 + }, + "text/plain": [ + "BokehModel(combine_events=True, render_bundle={'docs_json': {'fe7255a7-a760-40c3-b756-9a2bf0b8e621': {'version…" + ] + }, + "execution_count": 10, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "base_array.hvplot.image(\n", + " x='x', \n", + " y='y', \n", + " clim=(vmin, vmax), \n", + " cmap='RdBu',\n", + " groupby='time',\n", + " widget_location='bottom',\n", + " aspect='equal',\n", + " title=(\" \").join(base_array.attrs['standard_name'].split(\"_\"))\n", + ")" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "a49cf51d-5c40-4574-93e4-904202024c14", + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "environment": { + "kernel": "conda-env-python313-py", + "name": "workbench-notebooks.m136", + "type": "gcloud", + "uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m136" + }, + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.13.2" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/pyproject.toml b/pyproject.toml index 450d210..0194970 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -21,6 +21,7 @@ classifiers = [ ] dependencies = [ + "coiled>=1.129.3", "cftime>=1.6.5", "dask>=2025.11.0", "fsspec>=2025.9.0", @@ -28,18 +29,21 @@ dependencies = [ "h5netcdf>=1.7.3", "holoviews>=1.19.0", "hvplot>=0.10.0", + "icechunk>=1.1.13", "ipywidgets>=8.1.0", "jupyter>=1.1.0", "jupyter-bokeh>=4.0.5", "matplotlib>=3.10.7", "netcdf4>=1.7.0", "numpy>=2.3.4", + "obstore>=0.8.2", "pandas>=2.3.3", "panel>=1.5.4", "pyarrow>=22.0.0", "pyproj>=3.7.0", "pyyaml>=6.0.0", "scipy>=1.16.2", + "virtualizarr>=2.2.1", "xarray>=2025.10.1", ] diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000..74e748c --- /dev/null +++ b/requirements.txt @@ -0,0 +1,32 @@ +# Mandatory Lithops packages +google-cloud +google-cloud-storage +google-cloud-pubsub +google-auth +google-api-python-client +numpy +six +requests +redis +pika +scikit-learn +diskcache +cloudpickle +ps-mem +tblib +PyYAML +urllib3 +psutil + +# other packages +lithops +icechunk +obstore +xarray +virtualizarr +zarr +numpy +pandas +h5netcdf +gcsfs +pyproj diff --git a/uv.lock b/uv.lock index f946ee4..2e0615f 100644 --- a/uv.lock +++ b/uv.lock @@ -1,5 +1,5 @@ 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import datetime, timezone + +from virtualizarr import open_virtual_dataset +from virtualizarr.parsers import HDFParser +from virtualizarr.registry import ObjectStoreRegistry +from virtualizarr.writers.icechunk import virtual_dataset_to_icechunk + +import zarr + +def virtualize_file(row: dict): + """Virtualize a single file. Executed as a serverless function. + + Returns: + dict with 'path', 'dataset', and 'url' keys + """ + parser = HDFParser() + bucket = "gs://ismip6" + store = obstore.store.from_url(bucket, skip_signature=True) + registry = ObjectStoreRegistry({bucket: store}) + + path = f'{row["institution"]}_{row["model_name"]}/{row["experiment"]}/{row["variable"]}' # DataTree path + + vds = open_virtual_dataset( + url=row["url"], + parser=parser, + registry=registry, + loadable_variables=['time', 'x', 'y', 'lat', 'lon', 'latitude', 'longitude'], + decode_times=False + ) + vds_fix_time = ismip6_helper.fix_time_encoding(vds) + print(row) + vds_fix_coords = ismip6_helper.correct_grid_coordinates(vds_fix_time, row["variable"]) + + return { + "success": True, + "path": path, + "dataset": vds_fix_coords, + "url": row["url"] + } + +def open_or_create_repo() -> icechunk.Repository: + # Setup Icechunk config + config = icechunk.RepositoryConfig.default() + config.set_virtual_chunk_container( + icechunk.VirtualChunkContainer( + "gs://ismip6/", + store=icechunk.gcs_store() + ) + ) + + # Use None for anonymous/public access to source data + credentials = icechunk.containers_credentials({ + "gs://ismip6/": None + }) + + icechunk_storage = icechunk.gcs_storage(bucket="ismip6-icechunk", prefix="12-07-2025", from_env=True) + + return icechunk.Repository.open_or_create(icechunk_storage, config=config, authorize_virtual_chunk_access=credentials) + +def write_batch_to_icechunk(batch_results: list): + """Write a batch of virtual datasets to Icechunk in a single commit. + + Args: + batch_results: List of dicts with 'path', 'dataset', and 'url' keys + + Returns: + dict with commit_id and list of written paths + """ + repo = open_or_create_repo() + session = repo.writable_session("main") + + # Write all datasets in the batch + written_paths = [] + for result in batch_results: + virtual_dataset_to_icechunk(result["dataset"], session.store, group=result["path"]) + written_paths.append(result["path"]) + + # Single commit for the entire batch + commit_msg = f"Added {len(written_paths)} datasets: {', '.join(written_paths)}" + commit_id = session.commit(commit_msg) + + return { + "commit_id": commit_id, + "paths": written_paths, + "count": len(written_paths) + } + +def safe_virtualize_file(row): + """Wrapper around virtualize_file with error handling.""" + try: + return virtualize_file(row) + except Exception as e: + return { + "success": False, + "error": str(e), + "url": row["url"] + } + +def write_failures_to_bucket(failed_results: list): + """Write failed results to the bucket immediately. + + Args: + failed_results: List of dicts with failure information + """ + if not failed_results: + return + + failure_log_bucket = "gs://ismip6-icechunk" + failure_log_path = f"failures/virtualization_failures_{datetime.now(timezone.utc).strftime('%Y%m%d_%H%M%S')}.json" + + try: + failure_store = obstore.store.from_url(failure_log_bucket) + failure_data = json.dumps(failed_results, indent=2).encode('utf-8') + failure_store.put(failure_log_path, failure_data) + print(f" ✓ Logged {len(failed_results)} failures to {failure_log_bucket}/{failure_log_path}") + except Exception as e: + print(f" ✗ Failed to log failures to bucket: {e}") + print(" Failed results:") + print(json.dumps(failed_results, indent=2)) + + +def process_all_files(): + """Process all files using Lithops serverless executor. + + Strategy: + 1. Build file index and group by model and experiment + 2. For each group (batch): + - Parallelize virtualization using Lithops + - Write all successful virtualizations to Icechunk in one commit + 3. Process batches sequentially to avoid Icechunk conflicts + """ + import warnings + # Silence the specific Zarr warning + warnings.filterwarnings('ignore', module='zarr') + + # Step 1: Build file index + print("Step 1/3: Building file index...") + files_df = ismip6_helper.build_file_index() + print(f"Step 1/3 Complete: Built file index with {len(files_df)} files!") + + # Step 2: Group by model and experiment + print("\nStep 2/3: Grouping files by model and experiment...") + grouped = files_df.groupby(['institution', 'model_name', 'experiment']) + # skip groups already in the zarr store + repo = open_or_create_repo() + session = repo.readonly_session(branch="main") + root = zarr.open(session.store, mode='r') + batches = [ + (name, group.to_dict('records')) + for name, group in grouped + if f"{name[0]}_{name[1]}/{name[2]}" not in root + ] + print(f"Step 2/3 Complete: Created {len(batches)} batches") + + # Initialize Lithops executor + fexec = lithops.FunctionExecutor(config_file='lithops.yaml') + + # Step 3: Process each batch sequentially + print("\nStep 3/3: Processing batches...") + total_successful = 0 + total_failed = 0 + + for batch_idx, ((_, model_name, experiment), batch_files) in enumerate(batches, 1): + print(f"\n{'='*80}") + print(f"Batch {batch_idx}/{len(batches)}: {model_name} / {experiment}") + print(f"Files in batch: {len(batch_files)}") + print(f"{'='*80}") + + # Parallelize virtualization for this batch + print(f" Virtualizing {len(batch_files)} files in parallel...") + batch_files_as_row = [{'row': file} for file in batch_files] + futures = fexec.map(safe_virtualize_file, batch_files_as_row) + virtualization_results = fexec.get_result(futures) + + # Separate successful and failed virtualizations + successful_vds = [r for r in virtualization_results if r.get("success")] + failed_vds = [r for r in virtualization_results if not r.get("success")] + + print(f" ✓ Virtualized: {len(successful_vds)}/{len(batch_files)}") + if failed_vds: + print(f" ✗ Failed virtualization: {len(failed_vds)}") + + # Write successful virtualizations to Icechunk + if successful_vds: + try: + print(f" Writing {len(successful_vds)} datasets to Icechunk...") + write_result = write_batch_to_icechunk(successful_vds) + print(f" ✓ Committed {write_result['count']} datasets") + print(f" Commit ID: {write_result['commit_id']}") + total_successful += len(successful_vds) + except Exception as e: + print(f" ✗ Failed to write batch to Icechunk: {e}") + # Treat all successful virtualizations as failed if write fails + for result in successful_vds: + failed_vds.append({ + "success": False, + "url": result["url"], + "error": f"Icechunk write failed: {str(e)}", + "timestamp": datetime.now(timezone.utc).isoformat() + }) + + # Write failures immediately if any occurred + if failed_vds: + batch_failures = [ + { + **result, + "model_name": model_name, + "experiment": experiment, + "timestamp": datetime.now(timezone.utc).isoformat() + } + for result in failed_vds + ] + write_failures_to_bucket(batch_failures) + total_failed += len(failed_vds) + + # Clean up Lithops executor + fexec.clean() + + print(f"\n{'='*80}") + print(f"Step 3/3 Complete!") + print(f"Total successful: {total_successful}") + print(f"Total failed: {total_failed}") + print(f"{'='*80}") + + return { + "total_files": len(files_df), + "total_batches": len(batches), + "successful": total_successful, + "failed": total_failed + } + +if __name__ == "__main__": + result = process_all_files() + print(f"Processing complete: {result}")