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chore: cleanup logging package #4214

chore: cleanup logging package

chore: cleanup logging package #4214

Triggered via pull request August 26, 2026 09:01
Status Cancelled
Total duration 33m 22s
Artifacts 13

pr.yaml

on: pull_request
Matrix: integration-tests
Matrix: test-windows-integration
Matrix: test-windows-unit
Matrix: unit-tests
test-data-inventory
10s
test-data-inventory
memory-summary
16s
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39 errors and 34 warnings
unit--3.13--ubuntu-latest
Process completed with exit code 1.
unit--3.14--ubuntu-latest
Process completed with exit code 1.
unit--3.12--ubuntu-latest
Process completed with exit code 1.
unit--3.13--windows
Process completed with exit code 1.
unit--3.13--windows: echopype\tests\convert\test_convert_ek80.py#L587
test_check_unique_ping_time_duplicates assert False + where False = any(<generator object test_check_unique_ping_time_duplicates.<locals>.<genexpr> at 0x0000027789051BE0>)
unit--3.13--windows: echopype\tests\mask\test_mask.py#L1394
test_validate_source_ds_and_check_mask_dim_alignment TypeError: argument for warn() given by name ('category') and position (2)
unit--3.13--windows: echopype\tests\consolidate\test_add_depth.py#L171
test_warning_zero_vector AssertionError: assert 'Some beam direction vectors are zero' in '' + where '' = <_pytest.logging.LogCaptureFixture object at 0x0000012DF5ADC050>.text
unit--3.13--windows: echopype\tests\consolidate\test_add_depth.py#L146
test_ek_use_beam_angles_output AssertionError: assert 'Beam direction vector was not normalized' in '' + where '' = <_pytest.logging.LogCaptureFixture object at 0x0000012DF245F0E0>.text
unit--3.13--windows: echopype\tests\clean\test_noise.py#L867
test_estimate_background_noise_upsampling TypeError: argument for warn() given by name ('category') and position (2)
unit--3.14--windows
Process completed with exit code 1.
unit--3.12--windows
Process completed with exit code 1.
integration--3.14--ubuntu-latest
Process completed with exit code 1.
integration--3.12--ubuntu-latest
Process completed with exit code 1.
integration--3.13--ubuntu-latest: echopype/tests/calibrate/test_calibrate.py#L70
test_compute_Sv_ek60_echoview TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--ubuntu-latest: echopype/tests/calibrate/test_calibrate.py#L49
test_compute_Sv_returns_water_level TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--ubuntu-latest: echopype/tests/clean/test_noise.py#L827
test_mask_attenuated_signal_against_echopy[True] TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--ubuntu-latest: echopype/tests/clean/test_noise.py#L827
test_mask_attenuated_signal_against_echopy[False] TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--ubuntu-latest: echopype/tests/clean/test_noise.py#L793
test_mask_attenuated_signal_outside_searching_range TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--ubuntu-latest: echopype/tests/clean/test_noise.py#L773
test_mask_attenuated_signal_limit_error TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--ubuntu-latest: echopype/tests/calibrate/test_cal_params_integration.py#L103
test_cal_params_intake_EK60 TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--ubuntu-latest: echopype/tests/clean/test_noise.py#L697
test_impulse_noise_mask_values[True-True] TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--ubuntu-latest: echopype/tests/clean/test_noise.py#L697
test_impulse_noise_mask_values[True-False] TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--ubuntu-latest: echopype/tests/clean/test_noise.py#L697
test_impulse_noise_mask_values[False-True] TypeError: argument for warn() given by name ('category') and position (2)
integration--3.12--windows
Canceling since a higher priority waiting request for Test PR-remove-logger exists
integration--3.12--windows
The operation was canceled.
integration--3.13--windows
Canceling since a higher priority waiting request for Test PR-remove-logger exists
integration--3.13--windows: echopype\tests\calibrate\test_calibrate.py#L49
test_compute_Sv_returns_water_level TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--windows: echopype\tests\commongrid\test_commongrid_api.py#L182
test_compute_NASC[ek60_cw_power-True] TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--windows: echopype\tests\clean\test_noise.py#L827
test_mask_attenuated_signal_against_echopy[True] TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--windows: echopype\tests\clean\test_noise.py#L827
test_mask_attenuated_signal_against_echopy[False] TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--windows: echopype\tests\clean\test_noise.py#L793
test_mask_attenuated_signal_outside_searching_range TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--windows: echopype\tests\clean\test_noise.py#L773
test_mask_attenuated_signal_limit_error TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--windows: echopype\tests\calibrate\test_cal_params_integration.py#L103
test_cal_params_intake_EK60 TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--windows: echopype\tests\clean\test_noise.py#L697
test_impulse_noise_mask_values[True-True] TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--windows: echopype\tests\clean\test_noise.py#L697
test_impulse_noise_mask_values[True-False] TypeError: argument for warn() given by name ('category') and position (2)
integration--3.13--windows: echopype\tests\clean\test_noise.py#L697
test_impulse_noise_mask_values[False-True] TypeError: argument for warn() given by name ('category') and position (2)
integration--3.14--windows
Canceling since a higher priority waiting request for Test PR-remove-logger exists
integration--3.14--windows
The operation was canceled.
Test PR
Canceling since a higher priority waiting request for Test PR-remove-logger exists
unit--3.13--windows: echopype\convert\parse_base.py#L788
Casting complex values to real discards the imaginary part
unit--3.13--windows: echopype\convert\parse_base.py#L788
Casting complex values to real discards the imaginary part
unit--3.13--windows: echopype\consolidate\ek_depth_utils.py#L109
Some beam direction vectors are zero. Outputting NaN for those channels.
unit--3.13--windows: echopype\consolidate\ek_depth_utils.py#L101
Beam direction vector was not normalized; applying normalization. By definition, it should have been normalized.
unit--3.13--windows: C:\hostedtoolcache\windows\Python\3.13.15\x64\Lib\site-packages\flox\xrdtypes.py#L202
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
unit--3.13--windows: <frozen importlib._bootstrap>#L488
numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject
unit--3.13--windows: <frozen importlib._bootstrap>#L488
numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject
unit--3.13--windows: C:\hostedtoolcache\windows\Python\3.13.15\x64\Lib\site-packages\flox\xrdtypes.py#L68
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
unit--3.13--windows: C:\hostedtoolcache\windows\Python\3.13.15\x64\Lib\site-packages\flox\xrdtypes.py#L68
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
unit--3.13--windows: C:\hostedtoolcache\windows\Python\3.13.15\x64\Lib\site-packages\flox\xrdtypes.py#L68
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
integration--3.13--ubuntu-latest: ../../../../../opt/hostedtoolcache/Python/3.13.15/x64/lib/python3.13/site-packages/flox/xrdtypes.py#L202
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
integration--3.13--ubuntu-latest: echopype/commongrid/utils.py#L604
The ```echo_range``` coordinate array contain NaNs. Aggregation may be negatively impacted since Flox will not aggregate any ```Sv``` values that have corresponding NaN coordinate values. Consider handling these values before calling your intended commongrid function.
integration--3.13--ubuntu-latest: ../../../../../opt/hostedtoolcache/Python/3.13.15/x64/lib/python3.13/site-packages/flox/xrdtypes.py#L202
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
integration--3.13--ubuntu-latest: ../../../../../opt/hostedtoolcache/Python/3.13.15/x64/lib/python3.13/site-packages/flox/xrdtypes.py#L202
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
integration--3.13--ubuntu-latest: <frozen importlib._bootstrap>#L488
numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject
integration--3.13--ubuntu-latest: <frozen importlib._bootstrap>#L488
numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject
integration--3.13--ubuntu-latest: ../../../../../opt/hostedtoolcache/Python/3.13.15/x64/lib/python3.13/site-packages/flox/xrdtypes.py#L68
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
integration--3.13--ubuntu-latest: ../../../../../opt/hostedtoolcache/Python/3.13.15/x64/lib/python3.13/site-packages/flox/xrdtypes.py#L68
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
integration--3.13--ubuntu-latest: ../../../../../opt/hostedtoolcache/Python/3.13.15/x64/lib/python3.13/site-packages/flox/xrdtypes.py#L68
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
integration--3.13--ubuntu-latest: <frozen importlib._bootstrap>#L488
numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject
integration--3.13--ubuntu-latest: ../../../../../opt/hostedtoolcache/Python/3.13.15/x64/lib/python3.13/site-packages/flox/xrdtypes.py#L68
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
integration--3.13--windows: C:\hostedtoolcache\windows\Python\3.13.15\x64\Lib\site-packages\flox\xrdtypes.py#L202
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
integration--3.13--windows: C:\hostedtoolcache\windows\Python\3.13.15\x64\Lib\site-packages\flox\xrdtypes.py#L202
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
integration--3.13--windows: echopype\commongrid\utils.py#L604
The ```echo_range``` coordinate array contain NaNs. Aggregation may be negatively impacted since Flox will not aggregate any ```Sv``` values that have corresponding NaN coordinate values. Consider handling these values before calling your intended commongrid function.
integration--3.13--windows: C:\hostedtoolcache\windows\Python\3.13.15\x64\Lib\site-packages\flox\xrdtypes.py#L202
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
integration--3.13--windows: C:\hostedtoolcache\windows\Python\3.13.15\x64\Lib\site-packages\flox\xrdtypes.py#L202
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
integration--3.13--windows: <frozen importlib._bootstrap>#L488
numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject
integration--3.13--windows: <frozen importlib._bootstrap>#L488
numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject
integration--3.13--windows: C:\hostedtoolcache\windows\Python\3.13.15\x64\Lib\site-packages\flox\xrdtypes.py#L68
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
integration--3.13--windows: C:\hostedtoolcache\windows\Python\3.13.15\x64\Lib\site-packages\flox\xrdtypes.py#L68
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
integration--3.13--windows: C:\hostedtoolcache\windows\Python\3.13.15\x64\Lib\site-packages\flox\xrdtypes.py#L68
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.
integration--3.13--windows: <frozen importlib._bootstrap>#L488
numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject
integration--3.13--windows: C:\hostedtoolcache\windows\Python\3.13.15\x64\Lib\site-packages\flox\xrdtypes.py#L68
The 'generic' unit for NumPy timedelta is deprecated, and will raise an error in the future. This includes implicit conversion of bare integers (e.g. `+ 1`).Please use a specific unit instead.

Artifacts

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