devtools::install_github("helske/Rlibeemd")
Downloading GitHub repo helske/Rlibeemd@HEAD
checking for file ‘/tmp/RtmptW0VkH/remotes777d3cfa4949/helske-Rlibeemd-a237af ✔ checking for file ‘/tmp/RtmptW0VkH/remotes777d3cfa4949/helske-Rlibeemd-a237af 1/DESCRIPTION’
─ preparing ‘Rlibeemd’:
✔ checking DESCRIPTION meta-information ...
─ cleaning src
─ running ‘cleanup’
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ looking to see if a ‘data/datalist’ file should be added
─ building ‘Rlibeemd_1.4.1.tar.gz’
Installing package into ‘/home/lasorte/R_Libs’
(as ‘lib’ is unspecified)
- installing source package ‘Rlibeemd’ ...
** using staged installation
checking for gsl-config... /home/lasorte/appdir/bin/gsl-config
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/lasorte/R_Libs/Rcpp/ include" -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_ SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecor d-gcc-switches -m64 -mtune=generic -c RcppExports.cpp -o RcppExports.o
gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I"/home/lasorte/R_Libs/Rcpp/in clude" -I/usr/local/include -I/home/lasorte/appdir/include -fopenmp -fpic -O2 - g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --pa ram=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c bemd.c -o bemd.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/lasorte/R_Libs/Rcpp/ include" -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_ SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecor d-gcc-switches -m64 -mtune=generic -c bemdR.cpp -o bemdR.o
In file included from bemdR.cpp:4:
bemd.h:23:10: fatal error: gsl/gsl_errno.h: No such file or directory
#include <gsl/gsl_errno.h>
^~~~~~~~~~~~~~~~~
compilation terminated.
make: *** [bemdR.o] Error 1
ERROR: compilation failed for package ‘Rlibeemd’
- removing ‘/home/lasorte/R_Libs/Rlibeemd’
Error: Failed to install 'Rlibeemd' from GitHub:
(converted from warning) installation of package ‘/tmp/RtmptW0VkH/file777d2b59 7194/Rlibeemd_1.4.1.tar.gz’ had non-zero exit status
Installing package into ‘/home/lasorte/R_Libs’
(as ‘lib’ is unspecified)
** using staged installation
checking for gsl-config... /home/lasorte/appdir/bin/gsl-config
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/lasorte/R_Libs/Rcpp/ include" -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_ SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecor d-gcc-switches -m64 -mtune=generic -c RcppExports.cpp -o RcppExports.o
gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I"/home/lasorte/R_Libs/Rcpp/in clude" -I/usr/local/include -I/home/lasorte/appdir/include -fopenmp -fpic -O2 - g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --pa ram=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c bemd.c -o bemd.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/lasorte/R_Libs/Rcpp/ include" -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_ SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecor d-gcc-switches -m64 -mtune=generic -c bemdR.cpp -o bemdR.o
In file included from bemdR.cpp:4:
bemd.h:23:10: fatal error: gsl/gsl_errno.h: No such file or directory
#include <gsl/gsl_errno.h>
^~~~~~~~~~~~~~~~~
compilation terminated.
make: *** [bemdR.o] Error 1
ERROR: compilation failed for package ‘Rlibeemd’
Error: Failed to install 'Rlibeemd' from GitHub:
(converted from warning) installation of package ‘/tmp/RtmptW0VkH/file777d2b59 7194/Rlibeemd_1.4.1.tar.gz’ had non-zero exit status