.zshrc

if [ ! -n "$SHH_CLIENT" ] && [ ! -n "$SSH_TTY" ] && command -v tmux &> /dev/null && [ -n "$PS1" ] && [[ ! "$TERM" =~ tmux ]] && [ -z "$TMUX" ]&& [ -t 1 ]; then
    exec tmux
fi
zstyle ':omz:alpha:lib:git' async-prompt no
ssh-add ~/.ssh/id_rsa_aumc
# ssh-add ~/.ssh/id_rsa

# zmodload zsh/zprof
# If you come from bash you might have to change your $PATH.
# export PATH=$HOME/bin:/usr/local/bin:$PATH

# Color stderr red
export LD_PRELOAD="$HOME/repos/stderred/build/libstderred.so${LD_PRELOAD:+:$LD_PRELOAD}"
export STDERRED_BLACKLIST="^(clang.*|ccache)$"
# Alternatively: http://www.wikigentoo.ksiezyc.pl/Zsh.htm#Colorize_STDERR
# !! Cannot load bash after this
# exec 2>>(while read line; do
# print '\e[91m'${(q)line}'\e[0m' > /dev/tty; print -n $'\0'; done &)

# Path to your oh-my-zsh installation.
export ZSH="$HOME/.oh-my-zsh"

# Set name of the theme to load --- if set to "random", it will
# load a random theme each time oh-my-zsh is loaded, in which case,
# to know which specific one was loaded, run: echo $RANDOM_THEME
# See https://github.com/robbyrussell/oh-my-zsh/wiki/Themes
# ZSH_THEME="robbyrussell"
ZSH_THEME="sobole"

# Set list of themes to pick from when loading at random
# Setting this variable when ZSH_THEME=random will cause zsh to load
# a theme from this variable instead of looking in ~/.oh-my-zsh/themes/
# If set to an empty array, this variable will have no effect.
# ZSH_THEME_RANDOM_CANDIDATES=( "robbyrussell" "agnoster" )

# Uncomment the following line to use case-sensitive completion.
CASE_SENSITIVE="true"

# Uncomment the following line to use hyphen-insensitive completion.
# Case-sensitive completion must be off. _ and - will be interchangeable.
HYPHEN_INSENSITIVE="true"

# Uncomment the following line to disable bi-weekly auto-update checks.
# DISABLE_AUTO_UPDATE="true"

# Uncomment the following line to change how often to auto-update (in days).
# export UPDATE_ZSH_DAYS=13

# Uncomment the following line to disable colors in ls.
# DISABLE_LS_COLORS="true"

# Uncomment the following line to disable auto-setting terminal title.
# DISABLE_AUTO_TITLE="true"

# Uncomment the following line to enable command auto-correction.
# ENABLE_CORRECTION="true"

# Uncomment the following line to display red dots whilst waiting for completion.
# COMPLETION_WAITING_DOTS="true"

# Uncomment the following line if you want to disable marking untracked files
# under VCS as dirty. This makes repository status check for large repositories
# much, much faster.
# DISABLE_UNTRACKED_FILES_DIRTY="true"

# Uncomment the following line if you want to change the command execution time
# stamp shown in the history command output.
# You can set one of the optional three formats:
# "mm/dd/yyyy"|"dd.mm.yyyy"|"yyyy-mm-dd"
# or set a custom format using the strftime function format specifications,
# see 'man strftime' for details.
# HIST_STAMPS="mm/dd/yyyy"

# Would you like to use another custom folder than $ZSH/custom?
# ZSH_CUSTOM=/path/to/new-custom-folder

# Which plugins would you like to load?
# Standard plugins can be found in ~/.oh-my-zsh/plugins/*
# Custom plugins may be added to ~/.oh-my-zsh/custom/plugins/
# Example format: plugins=(rails git textmate ruby lighthouse)
# Add wisely, as too many plugins slow down shell startup.

export HOMEBREW_PREFIX="/home/hielke/.linuxbrew"
export HOMEBREW_CELLAR="/home/hielke/.linuxbrew/Cellar"
export HOMEBREW_REPOSITORY="/home/hielke/.linuxbrew/Homebrew"
export MANPATH="/home/hielke/.linuxbrew/share/man:$MANPATH"
export INFOPATH="/home/hielke/.linuxbrew/share/info:$INFOPATH"
export PATH="$PATH:/home/hielke/.linuxbrew/bin:/home/hielke/.linuxbrew/sbin"
# export PATH="$PATH:/home/hielke/.linuxbrew/bin:/home/hielke/.linuxbrew/sbin"

plugins=(
  poetry  # TODO: https://github.com/python-poetry/poetry/issues/1734

  git
  command-not-found
  web-search
  history
  dircycle
  dirhistory
  common-aliases
  colored-man-pages
  z
  zsh-syntax-highlighting
  history-substring-search
  zsh-completions
  zsh-autosuggestions
  tmux
  extract
  fancy-ctrl-z

  # sudo
  # python
  # debian
  # fzf
  # apply
)
# [ -f /etc/zsh_command_not_found ] && . /etc/zsh_command_not_found

export DISABLE_MAGIC_FUNCTIONS="true"

# Being able to load a lot of files
ulimit -n 2048

autoload -U compinit && compinit

source $ZSH/oh-my-zsh.sh

bindkey '^ ' autosuggest-accept
bindkey '^o' forward-word
bindkey '^b' backward-word
bindkey \^U backward-kill-line
bindkey "^[r" redo
bindkey '^[[13;5u' accept-line
bindkey '^[[1;2D' insert-cycledleft
bindkey '^[[1;2C' insert-cycledright

# Disable "safe glob"
unsetopt nomatch


# setopt NO_HIST_VERIFY # stops zsh from expanding !! notation when you hit enter

# User configuration

# export MANPATH="/usr/local/man:$MANPATH"

# You may need to manually set your language environment
# export LANG=en_US.UTF-8

# Preferred editor for local and remote sessions


# Compilation flags
# export ARCHFLAGS="-arch x86_64"

# ssh
# export SSH_KEY_PATH="~/.ssh/rsa_id"

# Set personal aliases, overriding those provided by oh-my-zsh libs,
# plugins, and themes. Aliases can be placed here, though oh-my-zsh
# users are encouraged to define aliases within the ZSH_CUSTOM folder.
# For a full list of active aliases, run `alias`.
#
# Example aliases
# alias zshconfig="mate ~/.zshrc"
# alias ohmyzsh="mate ~/.oh-my-zsh"


remove-safely () {
        mount_path=${1:0:${#mount_point}-1}
        mount_point=$(mount | grep $mount_path | cut -d" " -f1)
        echo $mount_point
        sync
        udisksctl unmount -b $mount_point
        udisksctl power-off -b $mount_point
}

PATH="/home/hielke/perl5/bin${PATH:+:${PATH}}"; export PATH;
PERL5LIB="/home/hielke/perl5/lib/perl5${PERL5LIB:+:${PERL5LIB}}"; export PERL5LIB;
PERL_LOCAL_LIB_ROOT="/home/hielke/perl5${PERL_LOCAL_LIB_ROOT:+:${PERL_LOCAL_LIB_ROOT}}"; export PERL_LOCAL_LIB_ROOT;
PERL_MB_OPT="--install_base \"/home/hielke/perl5\""; export PERL_MB_OPT;
PERL_MM_OPT="INSTALL_BASE=/home/hielke/perl5"; export PERL_MM_OPT;

# eval `perl -I ~/perl5/lib/perl5 -Mlocal::lib`
export MANPATH=$HOME/perl5/man:$MANPATH

if [ -f ~/.bash_aliases ]; then
    . ~/.bash_aliases
fi

setopt cdablevars

# export BROWSER="firefox -allow-downgrade -p default-release"
export BROWSER="/home/hielke/bin/browser"

# Weird fix for strange routers.
# alias ssh="ssh -o IPQoS=0"
alias clusterlogin="ssh -t hwalinga@student-linux.tudelft.nl 'ssh sb-ont.tudelft.nl'"
alias xclusterlogin="ssh -t -X hwalinga@student-linux.tudelft.nl 'ssh -X sb-ont.tudelft.nl'"
alias hpc="ssh -t hwalinga@student-linux.tudelft.nl 'ssh -t login3.hpc.tudelft.nl zsh'"
alias xhpc="ssh -t -X hwalinga@student-linux.tudelft.nl 'ssh -t -X login3.hpc.tudelft.nl zsh'"

alias hapta="ssh -t hwalinga@student-linux.tudelft.nl 'ssh -t hielke@apta-pe1.ewi.tudelft.nl bash'"
alias xhapta="ssh -t -X hwalinga@student-linux.tudelft.nl 'ssh -t -X hielke@apta-pe1.ewi.tudelft.nl bash'"
alias papta="ssh -t hwalinga@student-linux.tudelft.nl 'ssh postgres@apta-pe1.ewi.tudelft.nl'"

alias mawk="$HOME/.linuxbrew/bin/mawk"
export LESS="-RXMiX"
alias rg="rg -N -i"
unalias duf
alias duf="duf --theme light"
alias -g latestdownload="\"\$( ls -tr ~/Downloads | tail -n 1 | sed 's:^:$HOME/Downloads/:')\""

export PATH="$PATH:/home/hielke/programs/bin"

export PATH="$PATH:/home/hielke/.cargo/bin"

export PATH="$PATH:/home/hielke/node_modules/.bin"

# CUSTOM PATHS

# export PATH="$PATH:$HOME/programs/CRISPRCasFinder/bin"
# export MACSY_HOME="/home/hielke/programs/CRISPRCasFinder/macsyfinder-1.0.5/"
# export PATH="$PATH:/home/hielke/programs/ViennaRNA-2.4.3/src/bin"

# After sourcing Python environment, do not modify PATH
# source ~/.venv/py39/bin/activate

# export W3MIMGDISPLAY_PATH="/home/hielke/.linuxbrew/Cellar/w3m/0.5.3_6/libexec/w3m/w3mimgdisplay"

# export JAVA_HOME=/usr/lib/jvm/java-11-openjdk-amd64/
# export JRE_HOME=$JAVA_HOME

# export JAVA_HOME="/home/hielke/Downloads/jdk1.8.0_202"
# export JDK_HOME=$JAVA_HOME
# export JRE_HOME=$JAVA_HOME/jre
# export PATH="$JAVA_HOME/bin:$PATH"
# export CLASSPATH=".:$JAVA_HOME/lib:$JRE_HOME/lib"

# CATALINA (TOMCAT)
# export CATALINA_HOME=/usr/share/tomcat8
# export CATALINA_BASE=/home/hielke/code/genius-web/catalina-home

# export CATALINA_HOME=/home/hielke/code/genius-web/apache-tomcat-8.5.46/

# export CATALINA_PID="$CATALINA_BASE/tomcat.pid"

# I keep important notes here.
cat ~/Important

export PATH="$HOME/.poetry/bin:$PATH"
export PATH="$HOME/code/film-fountain/bin:$PATH"

# ==== FZF

# export DISABLE_FZF_KEY_BINDINGS="true"

export FZF_DEFAULT_COMMAND='fd --type f'

# Use fd (https://github.com/sharkdp/fd) instead of the default find
# command for listing path candidates.
# - The first argument to the function ($1) is the base path to start traversal
# - See the source code (completion.{bash,zsh}) for the details.
_fzf_compgen_path() {
  fd --hidden --follow --exclude ".git" . "$1"
}

# Use fd to generate the list for directory completion
_fzf_compgen_dir() {
  fd --type d --hidden --follow --exclude ".git" . "$1"
}

[ -f ~/.fzf.zsh ] && source ~/.fzf.zsh

clear_half_screen() {
    mid=$(( (LINES+1)/2 ))
    # Insert empty rows
    for i in {1..$(( LINES-mid-1 ))}; echo
    # move to middle
    tput cup $mid 2
}
zle -N clear_half_screen
bindkey '^}' clear_half_screen

HISTSIZE=10000000
SAVEHIST=10000000
setopt SHARE_HISTORY

export DJANGO_COLORS="light"

# export NVM_DIR="$HOME/.nvm"
# [ -s "$NVM_DIR/nvm.sh" ] && \. "$NVM_DIR/nvm.sh"  # This loads nvm
# [ -s "$NVM_DIR/bash_completion" ] && \. "$NVM_DIR/bash_completion"  # This loads nvm bash_completion

# >>> conda initialize >>>
# !! Contents within this block are managed by 'conda init' !!
__conda_setup="$('/home/hielke/miniconda3/bin/conda' 'shell.zsh' 'hook' 2> /dev/null)"
if [ $? -eq 0 ]; then
    eval "$__conda_setup"
else
    if [ -f "/home/hielke/miniconda3/etc/profile.d/conda.sh" ]; then
        . "/home/hielke/miniconda3/etc/profile.d/conda.sh"
    else
        export PATH="/home/hielke/miniconda3/bin:$PATH"
    fi
fi
unset __conda_setup

if [ -f "/home/hielke/miniconda3/etc/profile.d/mamba.sh" ]; then
    . "/home/hielke/miniconda3/etc/profile.d/mamba.sh"
fi
# <<< conda initialize <<<

alias conda=mamba

export PATH="/home/hielke/.local/bin:$PATH"


export PATH="$PATH:/home/hielke/.pyenv/versions/3.11.0/bin/"
export PATH="$PATH:/home/hielke/.pyenv/versions/3.8.0/bin/"


# source /home/hielke/.cache/pypoetry/virtualenvs/demap-kqoNszLJ-py3.11/bin/activate  # commented out by conda initialize
# emulate bash -c '. /home/hielke/repos/demap/.venv/bin/activate'
# conda activate minerva-backend
export PATH="/home/hielke/.pixi/bin:$PATH"
export PATH="/home/hielke/n/bin/:$PATH"
eval "$(direnv hook zsh)"
eval "$(mise activate zsh)"

export ANTHROPIC_CUSTOM_MODEL_OPTION="claude-opus-4-6"
export ANTHROPIC_CUSTOM_MODEL_OPTION_NAME="Opus 4.6"
export ANTHROPIC_CUSTOM_MODEL_OPTION_DESCRIPTION="Opus 4.6"

# source ~/.secrets