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Correct contigs data bug.
1 parent bcbcd1d commit e84cdcd

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Lines changed: 2 additions & 2 deletions

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metator/validation.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -64,12 +64,12 @@ def correct_final_bin(contigs_data, final_fasta_dir, bin_summary):
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pandas.core.frame.DataFrame
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Dataframe with the contigs informations.
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"""
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contigs_data.set_index("Name", inplace=True)
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contigs_data = contigs_data.set_index("Name")
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for bin_name in bin_summary:
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fasta_file = join(final_fasta_dir, f"{bin_name}.fa")
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fasta = pyfastx.Fasta(fasta_file)
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for seq in fasta:
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contigs_data.loc[seq.name]["Final_bin"] = bin_name
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contigs_data.loc[seq.name, "Final_bin"] = bin_name
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return contigs_data
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