After running minigraph --call I get the path of each of my samples within each of the bubbles.
My question is relatively simple and I'm mostly asking in order to be sure, since this is the first time I'm dealing with genome graphs!
So, in order to reconstruct the path of a sample within a bubble is it sufficient to concatenate the sequences of the segments mentioned in the last field of the bed output file? For example if the path is
is it sufficient to concatenate the following sequences?
Should I also take the L lines into account?
@lh3
After running
minigraph --callI get the path of each of my samples within each of the bubbles.My question is relatively simple and I'm mostly asking in order to be sure, since this is the first time I'm dealing with genome graphs!
So, in order to reconstruct the path of a sample within a bubble is it sufficient to concatenate the sequences of the segments mentioned in the last field of the
bedoutput file? For example if the path isis it sufficient to concatenate the following sequences?
Should I also take the L lines into account?
@lh3