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Update SSSOM Extended Prefix Map (#518)
This pull request updates sssom extended prefix map (epm). Make sure you run make tests manually. Co-authored-by: matentzn <[email protected]>
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‎src/sssom/obo.epm.json‎

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Original file line numberDiff line numberDiff line change
@@ -5990,6 +5990,20 @@
59905990
"https://n2t.net/swisslipid:"
59915991
]
59925992
},
5993+
{
5994+
"prefix": "SLSO",
5995+
"prefix_synonyms": [
5996+
"slso"
5997+
],
5998+
"uri_prefix": "http://purl.obolibrary.org/obo/SLSO_",
5999+
"uri_prefix_synonyms": [
6000+
"http://bioregistry.io/SLSO:",
6001+
"http://bioregistry.io/slso:",
6002+
"https://bioregistry.io/SLSO:",
6003+
"https://bioregistry.io/slso:",
6004+
"https://purl.obolibrary.org/obo/SLSO_"
6005+
]
6006+
},
59936007
{
59946008
"pattern": "^\\d{7}$",
59956009
"prefix": "SO",
@@ -9588,54 +9602,74 @@
95889602
{
95899603
"pattern": "^[0-9]+$",
95909604
"prefix": "civic.aid",
9605+
"prefix_synonyms": [
9606+
"civic.assertion"
9607+
],
95919608
"uri_prefix": "https://civicdb.org/links/assertions/",
95929609
"uri_prefix_synonyms": [
95939610
"http://bioregistry.io/civic.aid:",
9611+
"http://bioregistry.io/civic.assertion:",
95949612
"http://civicdb.org/links/assertions/",
95959613
"http://identifiers.org/civic.aid/",
95969614
"http://identifiers.org/civic.aid:",
95979615
"https://bioregistry.io/civic.aid:",
9616+
"https://bioregistry.io/civic.assertion:",
95989617
"https://identifiers.org/civic.aid/",
95999618
"https://identifiers.org/civic.aid:"
96009619
]
96019620
},
96029621
{
96039622
"pattern": "^[0-9]+$",
96049623
"prefix": "civic.did",
9624+
"prefix_synonyms": [
9625+
"civic.disease"
9626+
],
96059627
"uri_prefix": "https://civicdb.org/links/diseases/",
96069628
"uri_prefix_synonyms": [
96079629
"http://bioregistry.io/civic.did:",
9630+
"http://bioregistry.io/civic.disease:",
96089631
"http://civicdb.org/links/diseases/",
96099632
"http://identifiers.org/civic.did/",
96109633
"http://identifiers.org/civic.did:",
96119634
"https://bioregistry.io/civic.did:",
9635+
"https://bioregistry.io/civic.disease:",
96129636
"https://identifiers.org/civic.did/",
96139637
"https://identifiers.org/civic.did:"
96149638
]
96159639
},
96169640
{
96179641
"pattern": "^[0-9]+$",
96189642
"prefix": "civic.eid",
9643+
"prefix_synonyms": [
9644+
"civic.evidence"
9645+
],
96199646
"uri_prefix": "https://civicdb.org/links/evidence/",
96209647
"uri_prefix_synonyms": [
96219648
"http://bioregistry.io/civic.eid:",
9649+
"http://bioregistry.io/civic.evidence:",
96229650
"http://civicdb.org/links/evidence/",
96239651
"http://identifiers.org/civic.eid/",
96249652
"http://identifiers.org/civic.eid:",
96259653
"https://bioregistry.io/civic.eid:",
9654+
"https://bioregistry.io/civic.evidence:",
96269655
"https://identifiers.org/civic.eid/",
96279656
"https://identifiers.org/civic.eid:"
96289657
]
96299658
},
96309659
{
96319660
"pattern": "^[0-9]+$",
96329661
"prefix": "civic.gid",
9662+
"prefix_synonyms": [
9663+
"civic.gene"
9664+
],
96339665
"uri_prefix": "https://civicdb.org/links/gene/",
96349666
"uri_prefix_synonyms": [
9667+
"http://bioregistry.io/civic.gene:",
96359668
"http://bioregistry.io/civic.gid:",
96369669
"http://civicdb.org/links/gene/",
96379670
"http://identifiers.org/civic.gid/",
96389671
"http://identifiers.org/civic.gid:",
9672+
"https://bioregistry.io/civic.gene:",
96399673
"https://bioregistry.io/civic.gid:",
96409674
"https://identifiers.org/civic.gid/",
96419675
"https://identifiers.org/civic.gid:"
@@ -9644,12 +9678,17 @@
96449678
{
96459679
"pattern": "^[0-9]+$",
96469680
"prefix": "civic.mpid",
9681+
"prefix_synonyms": [
9682+
"civic.molecularprofile"
9683+
],
96479684
"uri_prefix": "https://civicdb.org/links/molecular_profile/",
96489685
"uri_prefix_synonyms": [
9686+
"http://bioregistry.io/civic.molecularprofile:",
96499687
"http://bioregistry.io/civic.mpid:",
96509688
"http://civicdb.org/links/molecular_profile/",
96519689
"http://identifiers.org/civic.mpid/",
96529690
"http://identifiers.org/civic.mpid:",
9691+
"https://bioregistry.io/civic.molecularprofile:",
96539692
"https://bioregistry.io/civic.mpid:",
96549693
"https://identifiers.org/civic.mpid/",
96559694
"https://identifiers.org/civic.mpid:"
@@ -9658,26 +9697,36 @@
96589697
{
96599698
"pattern": "^[0-9]+$",
96609699
"prefix": "civic.sid",
9700+
"prefix_synonyms": [
9701+
"civic.source"
9702+
],
96619703
"uri_prefix": "https://civicdb.org/links/sources/",
96629704
"uri_prefix_synonyms": [
96639705
"http://bioregistry.io/civic.sid:",
9706+
"http://bioregistry.io/civic.source:",
96649707
"http://civicdb.org/links/sources/",
96659708
"http://identifiers.org/civic.sid/",
96669709
"http://identifiers.org/civic.sid:",
96679710
"https://bioregistry.io/civic.sid:",
9711+
"https://bioregistry.io/civic.source:",
96689712
"https://identifiers.org/civic.sid/",
96699713
"https://identifiers.org/civic.sid:"
96709714
]
96719715
},
96729716
{
96739717
"pattern": "^[0-9]+$",
96749718
"prefix": "civic.tid",
9719+
"prefix_synonyms": [
9720+
"civic.therapy"
9721+
],
96759722
"uri_prefix": "https://civicdb.org/links/drugs/",
96769723
"uri_prefix_synonyms": [
9724+
"http://bioregistry.io/civic.therapy:",
96779725
"http://bioregistry.io/civic.tid:",
96789726
"http://civicdb.org/links/drugs/",
96799727
"http://identifiers.org/civic.tid/",
96809728
"http://identifiers.org/civic.tid:",
9729+
"https://bioregistry.io/civic.therapy:",
96819730
"https://bioregistry.io/civic.tid:",
96829731
"https://identifiers.org/civic.tid/",
96839732
"https://identifiers.org/civic.tid:"
@@ -9686,12 +9735,17 @@
96869735
{
96879736
"pattern": "^[0-9]+$",
96889737
"prefix": "civic.vgid",
9738+
"prefix_synonyms": [
9739+
"civic.variantgroup"
9740+
],
96899741
"uri_prefix": "https://civicdb.org/links/variant_group/",
96909742
"uri_prefix_synonyms": [
9743+
"http://bioregistry.io/civic.variantgroup:",
96919744
"http://bioregistry.io/civic.vgid:",
96929745
"http://civicdb.org/links/variant_group/",
96939746
"http://identifiers.org/civic.vgid/",
96949747
"http://identifiers.org/civic.vgid:",
9748+
"https://bioregistry.io/civic.variantgroup:",
96959749
"https://bioregistry.io/civic.vgid:",
96969750
"https://identifiers.org/civic.vgid/",
96979751
"https://identifiers.org/civic.vgid:"
@@ -9700,13 +9754,18 @@
97009754
{
97019755
"pattern": "^[0-9]+$",
97029756
"prefix": "civic.vid",
9757+
"prefix_synonyms": [
9758+
"civic.variant"
9759+
],
97039760
"uri_prefix": "https://civicdb.org/links/variant/",
97049761
"uri_prefix_synonyms": [
9762+
"http://bioregistry.io/civic.variant:",
97059763
"http://bioregistry.io/civic.vid:",
97069764
"http://civic.genome.wustl.edu/links/variants/",
97079765
"http://civicdb.org/links/variant/",
97089766
"http://identifiers.org/civic.vid/",
97099767
"http://identifiers.org/civic.vid:",
9768+
"https://bioregistry.io/civic.variant:",
97109769
"https://bioregistry.io/civic.vid:",
97119770
"https://civic.genome.wustl.edu/links/variants/",
97129771
"https://identifiers.org/civic.vid/",
@@ -10286,6 +10345,26 @@
1028610345
"https://bioregistry.io/cpt:"
1028710346
]
1028810347
},
10348+
{
10349+
"prefix": "cran",
10350+
"uri_prefix": "https://cran.r-project.org/web/packages/",
10351+
"uri_prefix_synonyms": [
10352+
"http://CRAN.R-project.org/package=",
10353+
"http://bioregistry.io/cran:",
10354+
"http://cran.r-project.org/web/packages/",
10355+
"https://CRAN.R-project.org/package=",
10356+
"https://bioregistry.io/cran:"
10357+
]
10358+
},
10359+
{
10360+
"prefix": "crates",
10361+
"uri_prefix": "https://crates.io/crates/",
10362+
"uri_prefix_synonyms": [
10363+
"http://bioregistry.io/crates:",
10364+
"http://crates.io/crates/",
10365+
"https://bioregistry.io/crates:"
10366+
]
10367+
},
1028910368
{
1029010369
"pattern": "^[0-9]+$",
1029110370
"prefix": "crisprdb",
@@ -10455,6 +10534,16 @@
1045510534
"https://bioregistry.io/ctis:"
1045610535
]
1045710536
},
10537+
{
10538+
"pattern": "^CTRI/\\d{4}/\\d{2}/\\d+$",
10539+
"prefix": "ctri",
10540+
"uri_prefix": "https://trialsearch.who.int/Trial2.aspx?TrialID=",
10541+
"uri_prefix_synonyms": [
10542+
"http://bioregistry.io/ctri:",
10543+
"http://trialsearch.who.int/Trial2.aspx?TrialID=",
10544+
"https://bioregistry.io/ctri:"
10545+
]
10546+
},
1045810547
{
1045910548
"pattern": "^[A-Za-z_0-9]+$",
1046010549
"prefix": "cubedb",
@@ -19338,6 +19427,15 @@
1933819427
"https://bioregistry.io/novus:"
1933919428
]
1934019429
},
19430+
{
19431+
"prefix": "npm",
19432+
"uri_prefix": "https://www.npmjs.com/package/",
19433+
"uri_prefix_synonyms": [
19434+
"http://bioregistry.io/npm:",
19435+
"http://www.npmjs.com/package/",
19436+
"https://bioregistry.io/npm:"
19437+
]
19438+
},
1934119439
{
1934219440
"pattern": "^\\d+$",
1934319441
"prefix": "npo",
@@ -19401,6 +19499,16 @@
1940119499
"https://bioregistry.io/nxr:"
1940219500
]
1940319501
},
19502+
{
19503+
"pattern": "^[1-9]\\d{3,7}$",
19504+
"prefix": "nztcs",
19505+
"uri_prefix": "https://nztcs.org.nz/nztcs-species/",
19506+
"uri_prefix_synonyms": [
19507+
"http://bioregistry.io/nztcs:",
19508+
"http://nztcs.org.nz/nztcs-species/",
19509+
"https://bioregistry.io/nztcs:"
19510+
]
19511+
},
1940419512
{
1940519513
"prefix": "oa",
1940619514
"uri_prefix": "http://www.w3.org/ns/oa#",
@@ -20167,6 +20275,15 @@
2016720275
"https://n2t.net/p3db.site:"
2016820276
]
2016920277
},
20278+
{
20279+
"prefix": "packagist",
20280+
"uri_prefix": "https://packagist.org/packages/",
20281+
"uri_prefix_synonyms": [
20282+
"http://bioregistry.io/packagist:",
20283+
"http://packagist.org/packages/",
20284+
"https://bioregistry.io/packagist:"
20285+
]
20286+
},
2017020287
{
2017120288
"pattern": "^\\d+$",
2017220289
"prefix": "paleodb",
@@ -22612,6 +22729,15 @@
2261222729
"https://scicrunch.org/resolver/RRID:RRRC_"
2261322730
]
2261422731
},
22732+
{
22733+
"prefix": "rubygems",
22734+
"uri_prefix": "https://rubygems.org/gems/",
22735+
"uri_prefix_synonyms": [
22736+
"http://bioregistry.io/rubygems:",
22737+
"http://rubygems.org/gems/",
22738+
"https://bioregistry.io/rubygems:"
22739+
]
22740+
},
2261522741
{
2261622742
"pattern": "^[0-9a-z]{24,24}$",
2261722743
"prefix": "runbiosimulations",

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