Some black fixes (#490)

Author: matentzn

src/sssom/cli.py

@@ -395,7 +395,9 @@ def diff(inputs: Tuple[str, str], output: TextIO):
     )
     msdf.metadata[  # type:ignore
         "comment"
-    ] = f"Diff between {input1} and {input2}. See comment column for information."
+    ] = (
+        f"Diff between {input1} and {input2}. See comment column for information."
+    )
     write_table(msdf, output)
 
 

src/sssom/parsers.py

@@ -232,7 +232,7 @@ def parse_sssom_rdf(
     prefix_map: ConverterHint = None,
     meta: Optional[MetadataType] = None,
     serialisation=SSSOM_DEFAULT_RDF_SERIALISATION,
-    **kwargs
+    **kwargs,
     # mapping_predicates: Optional[List[str]] = None,
 ) -> MappingSetDataFrame:
     """Parse a TSV to a :class:`MappingSetDocument` to a :class:`MappingSetDataFrame`."""

src/sssom/util.py

@@ -932,9 +932,9 @@ def deal_with_negation(df: pd.DataFrame) -> pd.DataFrame:
             & (reconciled_df_subset[CONFIDENCE] == row_2[CONFIDENCE])
         )
 
-        reconciled_df_subset.loc[
-            match_condition_2[match_condition_2].index, PREDICATE_MODIFIER
-        ] = row_2[PREDICATE_MODIFIER]
+        reconciled_df_subset.loc[match_condition_2[match_condition_2].index, PREDICATE_MODIFIER] = (
+            row_2[PREDICATE_MODIFIER]
+        )
 
     if PREDICATE_MODIFIER in reconciled_df_subset.columns:
         reconciled_df_subset[PREDICATE_MODIFIER] = reconciled_df_subset[PREDICATE_MODIFIER].fillna(

tests/test_convert.py

@@ -1,4 +1,5 @@
 """Tests for conversion utilities."""
+
 import unittest
 
 from sssom.parsers import parse_sssom_table