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NAMESPACE
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111 lines (110 loc) · 3.03 KB
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# Generated by roxygen2: do not edit by hand
export("%>%")
export(adapt_mean_stability)
export(all_inferences)
export(all_inferences_new)
export(clustering_CORE)
export(clustering_SBM)
export(compute_aggreg_measures)
export(evalQuali)
export(get_count_table)
export(get_par_corr)
export(just_EMtree)
export(just_PLN)
export(just_ZiLN)
export(just_gcoda)
export(just_magma)
export(just_spiec)
export(just_spring)
export(new_synth_data)
import(ggplot2)
importFrom(EMtree,ResampleEMtree)
importFrom(EMtree,draw_network)
importFrom(EMtree,freq_selec)
importFrom(EMtree,generator_graph)
importFrom(EMtree,generator_param)
importFrom(PLNmodels,PLNnetwork)
importFrom(PLNmodels,PLNnetwork_param)
importFrom(PLNmodels,getBestModel)
importFrom(PLNmodels,stability_selection)
importFrom(RColorBrewer,brewer.pal)
importFrom(RColorBrewer,brewer.pal.info)
importFrom(Rcpp,sourceCpp)
importFrom(Rfit,rfit)
importFrom(SPRING,SPRING)
importFrom(SPRING,hugeKmb)
importFrom(SPRING,synthData_from_ecdf)
importFrom(SpiecEasi,clr)
importFrom(SpiecEasi,sparseiCov)
importFrom(SpiecEasi,spiec.easi)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,row_number)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(future,plan)
importFrom(ggm,fitConGraph)
importFrom(ggm,parcor)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_size_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_light)
importFrom(ggplot2,theme_minimal)
importFrom(ggraph,create_layout)
importFrom(ggraph,geom_edge_link)
importFrom(ggraph,geom_node_point)
importFrom(ggraph,ggraph)
importFrom(ggraph,theme_graph)
importFrom(grDevices,rainbow)
importFrom(huge,huge)
importFrom(huge,huge.mb)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,is_connected)
importFrom(magrittr,"%>%")
importFrom(parallel,mclapply)
importFrom(pulsar,getLamPath)
importFrom(pulsar,getMaxCov)
importFrom(pulsar,pulsar)
importFrom(rMAGMA,magma)
importFrom(randomcoloR,distinctColorPalette)
importFrom(reshape2,melt)
importFrom(sbm,estimateSimpleSBM)
importFrom(stats,as.formula)
importFrom(stats,cor)
importFrom(stats,cov2cor)
importFrom(stats,dnorm)
importFrom(stats,ecdf)
importFrom(stats,integrate)
importFrom(stats,lm)
importFrom(stats,model.matrix)
importFrom(stats,optim)
importFrom(stats,pnorm)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,var)
importFrom(tibble,as_tibble)
importFrom(tidygraph,activate)
importFrom(tidygraph,as_tbl_graph)
importFrom(utils,read.delim)
importFrom(utils,tail)
useDynLib(OneNet)