Date: 2020-05-05
Updates and bug fixes
- Error checking for vmin/vmax in compute-saddle
- Various updates and fixes to expected and dot-caller code
Project health
- Added docs on RTD, tutorial notebooks, code formatting, linting, and contribution guidelines.
Date: 2019-11-04
-
Several library utilities added:
plotting.gridspec_inches,adaptive_coarsegrain, singleton interpolation, and colormaps. -
New tools:
cooltools samplefor random downsampling,cooltools coveragefor marginalization.
Improvements to saddle functions:
compute-saddlenow saves saddledata without transformation, and thescaleargument (with optionslogorlinear) now only determines how the saddle is plotted. Consequently,saddleplotfunction now expects untransformedsaddledata, and plots it directly or with log-scaling of the colormap. (open2c#105)- Added
saddle.mask_bad_binsmethod to filter bins in a track based on Hi-C bin-level filtering - improves saddle and histograms when using ChIP-seq and similar tracks. It is automatically applied in the CLI interface. Shouldn't affect the results when using eigenvectors calculated from the same data. make_saddlePython function andcompute-saddleCLI now allow setting min and max distance to use for calculating saddles.
Date: 2019-05-02
- New tagged release for DCIC. Many updates, including more memory-efficient insulation score calling. Next release should include docs.
Date: 2018-05-07
- First official release