From f0afb7f8c35a7a009ecf2c9bcadca1eff0ba2237 Mon Sep 17 00:00:00 2001 From: Parashara Shamaprasad Date: Wed, 18 Mar 2020 11:12:05 -0500 Subject: [PATCH 1/4] Initial commit from tip3p water example. This is only the setup for the GROMACS simulation. A LAMMPS simulation still needs to be added --- .../topology-water-box-gromacs.ipynb | 311 ++++++++++++++++++ 1 file changed, 311 insertions(+) create mode 100644 tip3p-water-box/topology-water-box-gromacs.ipynb diff --git a/tip3p-water-box/topology-water-box-gromacs.ipynb b/tip3p-water-box/topology-water-box-gromacs.ipynb new file mode 100644 index 0000000..59e4557 --- /dev/null +++ b/tip3p-water-box/topology-water-box-gromacs.ipynb @@ -0,0 +1,311 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Water Box Example -- GROMACS\n", + "\n", + "In this simulation a GROMACS simulation of tip3p water is set up and run using `mBuild` and `GMSO`." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "import mbuild as mb\n", + "\n", + "import gmso\n", + "from gmso import ForceField\n", + "from gmso.external import convert_mbuild\n", + "from gmso.formats.gro import write_gro\n", + "from gmso.formats.top import write_top" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "%%writefile spce.mol2\n", + "@MOLECULE\n", + "RES\n", + "3 0 1 0 1\n", + "SMALL\n", + "NO_CHARGES\n", + "@CRYSIN\n", + " 3.0130 3.0130 3.0130 90.0000 90.0000 90.0000 1 1\n", + "@ATOM\n", + " 1 O 0.0000 0.0000 0.0000 O 1 RES \n", + " 2 H -0.6126 -0.7357 0.0000 H 1 RES \n", + " 3 H -0.5469 0.7762 0.0000 H 1 RES \n", + "@BOND\n", + " 1 1 2 1\n", + " 2 1 3 1\n", + "@SUBSTRUCTURE\n", + " 1 RES 1 RESIDUE 0 **** ROOT 0" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Load in single water (SPC/E) structure\n", + "\n", + "water = mb.load(\"spce.mol2\")\n", + "water = water.children[0]\n", + "water.name = \"water\"\n", + "\n", + "# element_map = which site name corresponds to which atom_type name. \n", + "# In the future atomtyping will be done through foyer. \n", + "element_map = {\"O\": \"opls_116\",\n", + " \"H\": \"opls_117\"}" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Fill a box with 1000 water molecule\n", + "\n", + "water_box = mb.fill_box(\n", + " compound=water, \n", + " n_compounds=1000,\n", + " density=1000,\n", + ")" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Write out the SPC/E water xml file\n", + "%%writefile spce.xml\n", + "\n", + "\n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + "" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Load in topology forcefield\n", + "\n", + "forcefield = ForceField(\"spce.xml\")" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Generate a topology from the mbuild compound\n", + "\n", + "top = convert_mbuild.from_mbuild(water_box)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Assign atom types\n", + "for atom in top.sites:\n", + " atom.atom_type = forcefield.atom_types[element_map[atom.name]]\n", + " \n", + "# Assign bond types\n", + "for bond in top.bonds:\n", + " bond.bond_type = bond.connection_type = forcefield.bond_types[\"opls_116~opls_117\"]\n", + "\n", + "# Create angles with correct atom type and add to top\n", + "for subtop in top.subtops:\n", + " angle = gmso.core.angle.Angle(\n", + " connection_members=[site for site in subtop.sites],\n", + " name=\"opls_116~opls_117~opls_117\",\n", + " connection_type=forcefield.angle_types[\"opls_116~opls_117~opls_117\"]\n", + " )\n", + " top.add_connection(angle, update_types=False)\n", + "\n", + "top.update_topology()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Write out gro and top files\n", + "\n", + "write_gro(top, \"system.gro\")\n", + "write_top(top, \"system.top\")" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Lets look at the TOP file\n", + "\n", + "!cat system.top" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Write out an MDP file for an NPT simulation\n", + "%%writefile npt.mdp\n", + "constraints = h-bonds\n", + "integrator = md\n", + "nsteps = 1000000\n", + "dt = 0.001\n", + "\n", + "nstxtcout = 10\n", + "nstenergy = 1000\n", + "nstlog = 1000\n", + "\n", + "cutoff-scheme = Verlet\n", + "ns_type = grid\n", + "nstlist = 10\n", + "rcoulomb = 0.8\n", + "rvdw = 0.8 \n", + "\n", + "coulombtype = PME\n", + "\n", + "gen_vel = yes\n", + "\n", + "tcoupl = nose-hoover\n", + "tc-grps = System\n", + "tau_t = 1\n", + "ref_t = 300\n", + "\n", + "pcoupl = Parrinello-Rahman\n", + "pcoupltype = isotropic\n", + "tau-p = 10\n", + "ref-p = 1\n", + "compressibility = 1e-5" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "!gmx grompp -f npt.mdp -c system.gro -p system.top -o npt.tpr -maxwarn 2" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "!gmx mdrun -v -s npt.tpr" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "import mdtraj as md\n", + "traj = md.load(\"traj_comp.xtc\", top=\"system.gro\")" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "traj" + ] + }, + { + "cell_type": "raw", + "metadata": {}, + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.8.2" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} From d7e6690308fe15bcb65ab76b49aa03aac8efff23 Mon Sep 17 00:00:00 2001 From: "Ray A. Matsumoto" Date: Fri, 20 Mar 2020 14:00:14 -0500 Subject: [PATCH 2/4] Add lammps example --- tip3p-water-box/files/in.tip3p | 30 ++++++ tip3p-water-box/files/tip3p.mol2 | 16 ++++ tip3p-water-box/files/tip3p.xml | 42 +++++++++ tip3p-water-box/tip3p_lammps.ipynb | 141 +++++++++++++++++++++++++++++ 4 files changed, 229 insertions(+) create mode 100644 tip3p-water-box/files/in.tip3p create mode 100644 tip3p-water-box/files/tip3p.mol2 create mode 100644 tip3p-water-box/files/tip3p.xml create mode 100644 tip3p-water-box/tip3p_lammps.ipynb diff --git a/tip3p-water-box/files/in.tip3p b/tip3p-water-box/files/in.tip3p new file mode 100644 index 0000000..37453a7 --- /dev/null +++ b/tip3p-water-box/files/in.tip3p @@ -0,0 +1,30 @@ +dimension 3 +units real +boundary p p p + +atom_style full +pair_style lj/cut/coul/long 10 +bond_style harmonic +angle_style harmonic +box tilt large +read_data data.tip3p +kspace_style pppm 1.0e-5 + +# equilibration +velocity all create 300 4928549 +#minimize 0.0 0.0 100 4000 +#reset_timestep 0 + +fix 1 all shake 1e-6 200 0 b 1 a 1 +fix myNVT all nvt temp 300.0 300.0 100.0 + +neighbor 2.0 bin +neigh_modify delay 0 every 10 check yes + +thermo 10 +dump equildump all atom 10 water.lammpstrj +timestep 1 +run 100000 +log log.equil + +unfix myNVT diff --git a/tip3p-water-box/files/tip3p.mol2 b/tip3p-water-box/files/tip3p.mol2 new file mode 100644 index 0000000..796375c --- /dev/null +++ b/tip3p-water-box/files/tip3p.mol2 @@ -0,0 +1,16 @@ +@MOLECULE +RES +3 2 1 0 1 +SMALL +NO_CHARGES +@CRYSIN + 3.0130 3.0130 3.0130 90.0000 90.0000 90.0000 1 1 +@ATOM + 1 O 0.6100 1.0000 1.0000 opls_111 1 opls_111 + 2 H 0.1700 0.9000 1.7700 opls_112 1 opls_111 + 3 H 0.1100 1.5400 0.4000 opls_112 1 opls_111 +@BOND + 1 1 2 1 + 2 3 1 1 +@SUBSTRUCTURE + 1 RES 1 RESIDUE 0 **** ROOT 0 diff --git a/tip3p-water-box/files/tip3p.xml b/tip3p-water-box/files/tip3p.xml new file mode 100644 index 0000000..2ebe891 --- /dev/null +++ b/tip3p-water-box/files/tip3p.xml @@ -0,0 +1,42 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/tip3p-water-box/tip3p_lammps.ipynb b/tip3p-water-box/tip3p_lammps.ipynb new file mode 100644 index 0000000..95d1445 --- /dev/null +++ b/tip3p-water-box/tip3p_lammps.ipynb @@ -0,0 +1,141 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "import mbuild as mb\n", + "\n", + "import gmso\n", + "from gmso import ForceField\n", + "from gmso.external import convert_mbuild\n", + "from gmso.formats.lammpsdata import write_lammpsdata\n", + "from mbuild.formats.lammpsdata import write_lammpsdata" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Load in single water TIP3P structure\n", + "\n", + "water = mb.load(\"files/tip3p.mol2\")\n", + "water = water.children[0]\n", + "water.name = \"water\"\n", + "\n", + "# element_map = which site name corresponds to which atom_type name. \n", + "# In the future atomtyping will be done through foyer. \n", + "element_map = {\"O\": \"opls_111\",\n", + " \"H\": \"opls_112\"}" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Fill a box with 1000 water molecule\n", + "\n", + "water_box = mb.fill_box(\n", + " compound=water, \n", + " n_compounds=1000,\n", + " density=1000,\n", + ")" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Load in topology forcefield\n", + "\n", + "forcefield = ForceField(\"files/tip3p.xml\")" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Generate a topology from the mbuild compound\n", + "\n", + "top = convert_mbuild.from_mbuild(water_box)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Assign atom types\n", + "for atom in top.sites:\n", + " atom.atom_type = forcefield.atom_types[element_map[atom.name]]\n", + " \n", + "# Assign bond types\n", + "for bond in top.bonds:\n", + " bond.bond_type = bond.connection_type = forcefield.bond_types[\"opls_111~opls_112\"]\n", + "\n", + "# Create angles with correct atom type and add to top\n", + "for subtop in top.subtops:\n", + " angle = gmso.core.angle.Angle(\n", + " connection_members=[site for site in subtop.sites],\n", + " name=\"opls_112~opls_111~opls_112\",\n", + " connection_type=forcefield.angle_types[\"opls_112~opls_111~opls_112\"]\n", + " )\n", + " top.add_connection(angle, update_types=False)\n", + "\n", + "top.update_topology()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Write out LAMMPS Files\n", + "write_lammpsdata(top, 'data.tip3p')" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Run the lammps simulation\n", + "!lmp_serial < files/in.tip3p" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.6.8" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} From 644f9bf6d099fb751f1a4531846652ef7c461c4d Mon Sep 17 00:00:00 2001 From: "Ray A. Matsumoto" Date: Mon, 23 Mar 2020 13:42:50 -0500 Subject: [PATCH 3/4] Fix angle connection_members and clean up input file --- tip3p-water-box/files/in.tip3p | 5 +- tip3p-water-box/tip3p_lammps.ipynb | 10275 ++++++++++++++++++++++++++- 2 files changed, 10261 insertions(+), 19 deletions(-) diff --git a/tip3p-water-box/files/in.tip3p b/tip3p-water-box/files/in.tip3p index 37453a7..0ea31e6 100644 --- a/tip3p-water-box/files/in.tip3p +++ b/tip3p-water-box/files/in.tip3p @@ -10,10 +10,7 @@ box tilt large read_data data.tip3p kspace_style pppm 1.0e-5 -# equilibration velocity all create 300 4928549 -#minimize 0.0 0.0 100 4000 -#reset_timestep 0 fix 1 all shake 1e-6 200 0 b 1 a 1 fix myNVT all nvt temp 300.0 300.0 100.0 @@ -24,7 +21,7 @@ neigh_modify delay 0 every 10 check yes thermo 10 dump equildump all atom 10 water.lammpstrj timestep 1 -run 100000 +run 10000 log log.equil unfix myNVT diff --git a/tip3p-water-box/tip3p_lammps.ipynb b/tip3p-water-box/tip3p_lammps.ipynb index 95d1445..1141be3 100644 --- a/tip3p-water-box/tip3p_lammps.ipynb +++ b/tip3p-water-box/tip3p_lammps.ipynb @@ -2,22 +2,32 @@ "cells": [ { "cell_type": "code", - "execution_count": null, + "execution_count": 1, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/foyer/foyer/forcefield.py:433: UserWarning: No force field version number found in force field XML file.\n", + " 'No force field version number found in force field XML file.'\n", + "/Users/raymatsumoto/foyer/foyer/forcefield.py:445: UserWarning: No force field name found in force field XML file.\n", + " 'No force field name found in force field XML file.'\n" + ] + } + ], "source": [ "import mbuild as mb\n", "\n", "import gmso\n", "from gmso import ForceField\n", "from gmso.external import convert_mbuild\n", - "from gmso.formats.lammpsdata import write_lammpsdata\n", - "from mbuild.formats.lammpsdata import write_lammpsdata" + "from gmso.formats.lammpsdata import write_lammpsdata" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 2, "metadata": {}, "outputs": [], "source": [ @@ -35,7 +45,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 3, "metadata": {}, "outputs": [], "source": [ @@ -50,7 +60,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 4, "metadata": {}, "outputs": [], "source": [ @@ -61,9 +71,10226 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 5, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/subtopology.py:64: UserWarning: Setting a parent is potentially dangerous. Consider using Topology.add_subtopology instead\n", + " 'Setting a parent is potentially dangerous. Consider using '\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/element.py:60: UserWarning: Numbers and spaces are not considered when searching by element symbol. \n", + "\n", + " {} became {}'.format(symbol, symbol_trimmed)\n", + " warnings.warn(msg)\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/bond.py:51: UserWarning: Non-parametrized Bond detected\n", + " warnings.warn(\"Non-parametrized Bond detected\")\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/connection.py:86: UserWarning: Non-parametrized Connection detected\n", + " warnings.warn(\"Non-parametrized Connection detected\")\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849686792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849687408, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849688024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849688416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849687912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849688528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849688192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849675624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849676128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849676072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849675792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849675960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849676240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849675512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849675456, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849676184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849675176, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849676016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849674728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849673272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849674840, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849672992, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849674616, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849672768, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849674784, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849688080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4837355984, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849672600, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849590224, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849590112, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589608, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849590056, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589944, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849590000, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589776, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589888, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589720, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589832, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589664, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589496, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589160, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589216, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588992, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588768, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588824, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588712, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588936, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588544, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588600, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588320, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588488, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588376, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588432, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587648, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587088, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586472, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883472, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587760, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882408, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882464, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882296, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882352, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881848, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881904, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881736, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881568, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881400, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881456, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881288, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881344, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881176, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881232, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881064, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880952, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881008, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880840, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880896, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880784, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880616, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880672, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880504, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880560, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880392, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880448, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881680, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880336, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880280, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880224, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880056, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880112, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844818328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4786031528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4786032536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4786031248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4786031080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854406952, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854407008, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854407120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854407064, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183160, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183216, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183496, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183608, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880168, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183664, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183720, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183832, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183776, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183944, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184000, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184056, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184112, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184168, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184224, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184280, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184336, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184392, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184448, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184504, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184560, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184616, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184672, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184784, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184840, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184896, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184952, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185008, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185064, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185176, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185232, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185288, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185344, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185400, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185456, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185568, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185680, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185736, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183888, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185904, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185848, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186296, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186352, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186408, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186464, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845187024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849479752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849479808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849479864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849479920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849479976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480088, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480648, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480704, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480816, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480760, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480872, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480984, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481040, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481096, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481320, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481376, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481432, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481488, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481544, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481600, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481656, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481712, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481768, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481824, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481936, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481992, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482160, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482216, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480928, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482496, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482608, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482664, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482720, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482832, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482888, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482944, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483000, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483056, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483112, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483168, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483224, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483280, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483336, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483392, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483448, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483504, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483560, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483616, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483672, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482776, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849397832, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849397888, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398000, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398056, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849397944, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398112, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398224, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398280, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398336, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398392, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398448, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398504, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398560, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398616, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398672, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398784, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398840, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398896, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398952, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399008, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399064, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399176, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399232, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399288, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399344, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398168, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399400, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399568, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399680, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399736, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399848, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399904, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400296, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400464, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400352, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399456, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400408, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401472, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849258568, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849258624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849258680, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849258736, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849258792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849258848, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849258904, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849258960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259296, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259408, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259464, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259352, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260472, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261088, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261816, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261704, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261984, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262040, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262096, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261872, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261760, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262376, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262432, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262488, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262544, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575176, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575232, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575288, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575344, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575400, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575456, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575568, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262320, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575680, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575736, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575848, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575904, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576296, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576352, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576408, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576464, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577472, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578088, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578648, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578816, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578928, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578704, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578872, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854579152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854681672, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854681728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854681784, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854579040, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578984, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854681840, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854681896, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682008, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854681952, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682064, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682176, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682288, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682344, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682400, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682456, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682568, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682680, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682736, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682848, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682904, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683296, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683352, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683408, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683464, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684472, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685088, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685648, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849135688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849135856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849135744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849135912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849135968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682232, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849135800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136472, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137088, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137648, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137704, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137760, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137816, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137872, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137928, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137984, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138040, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138096, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138320, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138376, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138432, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138488, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138544, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138600, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138656, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138712, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138768, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138824, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138936, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138992, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139160, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139216, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139496, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139608, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139664, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849037208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849037264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849037096, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849037152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849037040, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036872, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036928, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036760, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036816, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036648, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036984, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036088, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036704, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035472, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034408, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034464, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034296, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034352, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033848, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033904, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033736, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033680, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033568, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033400, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033456, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033288, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033344, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001472, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002088, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002648, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002704, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002760, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002816, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002872, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002928, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002984, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003040, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003096, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003320, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003376, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003432, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003488, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003544, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003656, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003712, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003768, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003824, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003936, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003992, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004160, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004216, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004496, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003600, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086648, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086704, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086816, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086872, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086928, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086984, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087040, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087096, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087320, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087376, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087432, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087488, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087544, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087600, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087656, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087712, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087768, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087824, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087936, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087992, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088160, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088216, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088496, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088608, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088664, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088720, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088776, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088832, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088888, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088944, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089000, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089056, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089112, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089168, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089224, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089280, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089336, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089392, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089448, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089504, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089560, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089616, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089672, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089784, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089840, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089896, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090008, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090064, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090176, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090232, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090288, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086760, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089952, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090400, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090456, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443464, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090344, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444472, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445088, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445648, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445704, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445760, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445816, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445872, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445928, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445984, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446040, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446096, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446320, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446432, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446488, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446544, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446600, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446656, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446712, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446376, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446824, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446936, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446992, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848447048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848447104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848447160, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848447216, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848447272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848447328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848447384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848447440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848631880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848631936, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848631992, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632160, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632216, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632496, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632608, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632664, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632720, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632776, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632832, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632888, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632944, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633000, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633056, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633112, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633168, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633224, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633280, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633336, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633392, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633448, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633504, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446768, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633560, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633616, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633672, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633784, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633840, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633896, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633952, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634008, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634064, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634176, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634232, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634288, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634344, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634400, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634456, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634568, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634680, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634736, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634848, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634904, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635296, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635408, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635464, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848549960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550296, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550352, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550408, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550464, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551472, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635352, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552088, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552648, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552704, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552760, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552816, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552872, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552928, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552984, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553040, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553096, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553320, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553376, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553432, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553488, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553544, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553600, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553656, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553712, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553768, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553824, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553936, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484648, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484704, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484760, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484816, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484872, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484928, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485040, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485096, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485320, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485376, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485432, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485488, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485544, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485600, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485656, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484984, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485712, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485824, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485936, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485992, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486160, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486216, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486496, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486608, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486664, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486720, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486776, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486832, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486888, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486944, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487000, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487056, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487112, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487224, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487280, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487336, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487392, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487448, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487504, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485768, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487168, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487616, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487672, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487784, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487840, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487896, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487952, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848488008, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848488064, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848488120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848488176, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848488232, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848488288, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848488344, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848488400, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848320584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848320640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848320696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848320752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848320808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848320864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487560, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848320920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848320976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321088, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321648, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321704, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321760, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321816, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321872, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321928, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321984, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322040, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322096, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322320, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322376, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322432, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322488, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322544, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322600, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322656, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322712, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322768, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322824, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322936, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322992, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323160, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323216, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323496, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323608, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323664, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323720, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323776, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323832, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323888, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323944, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324000, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324056, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324112, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324168, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324224, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324280, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324336, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324392, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324448, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324504, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324560, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570496, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570608, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570720, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570776, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570832, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570888, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570944, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571000, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571056, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571112, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571168, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571224, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571280, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571336, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571392, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571448, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571504, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571560, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571616, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571672, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571784, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571840, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571896, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571952, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572008, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572064, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572176, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570664, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572232, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572344, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572400, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572456, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572568, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572680, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572736, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572848, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572904, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573296, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573352, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573408, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573464, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848574024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848574080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848574136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848574192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848574248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848574304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848574360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848574416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357448, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357504, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357560, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357616, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357672, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357784, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357840, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357896, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358008, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357952, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358176, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358232, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358288, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572288, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358344, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358064, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358456, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358568, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358680, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358736, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358848, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358904, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359296, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359352, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359408, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359464, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358400, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848361032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848361088, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848361144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848361200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848361256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848361312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848361368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848361424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258408, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360472, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258464, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258296, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258352, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257848, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257904, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257736, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257680, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257568, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257400, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257456, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257288, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257344, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257176, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257232, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257064, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256952, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257008, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256840, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256896, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256784, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256616, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256672, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256504, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256560, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256392, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256448, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256280, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256336, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256168, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256224, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256056, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256112, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255944, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256000, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255832, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255720, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255888, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255608, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255664, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255496, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255776, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255160, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255216, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259648, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259704, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259760, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259816, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259872, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259928, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259984, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260040, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260096, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260320, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260376, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260432, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260488, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260544, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260656, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260600, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260712, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260768, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260824, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260936, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260992, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261160, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261216, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261496, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261608, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261664, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261720, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261776, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261832, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261888, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261944, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262000, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262056, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262112, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262168, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262224, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262280, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262336, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262392, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262448, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262504, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262560, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262616, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262672, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262840, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262896, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262952, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848263008, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262784, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848263064, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848263120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218296, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218352, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218408, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218464, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219472, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220088, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220648, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220704, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220760, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220816, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220872, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220984, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221040, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221096, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221320, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221376, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221432, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221488, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221544, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221600, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221656, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221712, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221768, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221824, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221936, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221992, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848222160, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848222048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848222104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091320, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091376, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220928, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091432, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091488, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091544, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091656, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091712, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091768, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091824, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091936, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091992, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092160, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092216, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092496, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092608, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092664, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092720, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092776, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092832, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092888, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093000, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092944, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093056, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093112, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093168, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093224, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093280, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093336, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093392, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093448, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093504, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093560, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093616, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093672, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093784, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093840, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093896, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093952, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094008, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094064, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091600, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094232, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094288, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094344, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094400, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094456, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094568, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094680, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094736, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094848, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848095016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848095072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094904, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848095128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848095184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848156744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848156800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848156856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848156912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848156968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157472, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158088, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094176, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158648, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158704, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158760, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158816, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158872, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158928, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158984, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159040, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159096, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159320, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159376, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159432, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159488, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159544, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159600, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159656, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159712, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159768, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159824, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159936, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159992, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160160, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160216, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160496, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160608, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160664, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160720, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847935560, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847935616, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847935728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847935784, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847935840, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847935896, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847935952, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936008, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936064, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936176, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936232, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936288, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936344, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936400, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936456, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936568, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936680, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936736, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936848, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936904, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937296, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937352, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937408, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937464, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938472, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939088, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968496, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968608, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968664, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968720, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968776, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968832, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968888, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968944, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847935672, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969000, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969056, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969168, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969224, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969280, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969336, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969392, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969448, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969504, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969560, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969112, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969616, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969784, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969840, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969896, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969952, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970008, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970064, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970176, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970232, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970288, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970344, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970400, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970456, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970568, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970680, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970736, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970848, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970904, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971296, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971352, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971408, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971464, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971520, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969672, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971576, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971744, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971800, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971856, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971912, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847972024, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847972080, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847972136, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847972192, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847972248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847972304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538248, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538416, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971632, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538528, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538472, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538640, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538696, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538752, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538808, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538864, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539088, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539144, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539256, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539424, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539480, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539648, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539704, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539760, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539816, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539872, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539928, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539984, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540040, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540096, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540320, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540376, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540432, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540488, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540544, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540600, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540656, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540712, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538584, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540768, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540936, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540992, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541160, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541216, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541496, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541608, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541664, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541720, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541776, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541832, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541944, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847542000, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541888, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847542056, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847542112, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847542168, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847542224, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644568, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644456, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644344, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644400, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644232, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644288, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644176, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644008, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644064, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643896, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643952, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643784, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643840, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643672, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643728, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643560, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643616, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643448, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643504, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643336, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/box.py:16: UserWarning: Lengths are assumed to be in nm\n", + " warnings.warn('Lengths are assumed to be in nm')\n" + ] + } + ], "source": [ "# Generate a topology from the mbuild compound\n", "\n", @@ -72,7 +10299,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 6, "metadata": {}, "outputs": [], "source": [ @@ -85,9 +10312,10 @@ " bond.bond_type = bond.connection_type = forcefield.bond_types[\"opls_111~opls_112\"]\n", "\n", "# Create angles with correct atom type and add to top\n", + "# Adding `connection_members` in order specified by name\n", "for subtop in top.subtops:\n", " angle = gmso.core.angle.Angle(\n", - " connection_members=[site for site in subtop.sites],\n", + " connection_members=[subtop.sites[1], subtop.sites[0], subtop.sites[2]],\n", " name=\"opls_112~opls_111~opls_112\",\n", " connection_type=forcefield.angle_types[\"opls_112~opls_111~opls_112\"]\n", " )\n", @@ -98,9 +10326,18 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 7, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/formats/lammpsdata.py:82: UserWarning: Orthorhombic box detected\n", + " warnings.warn(\"Orthorhombic box detected\")\n" + ] + } + ], "source": [ "# Write out LAMMPS Files\n", "write_lammpsdata(top, 'data.tip3p')" @@ -108,9 +10345,17 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 8, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "/bin/sh: lmp_serial: command not found\r\n" + ] + } + ], "source": [ "# Run the lammps simulation\n", "!lmp_serial < files/in.tip3p" From f53bbee3a2938126a6ef05792cb9b165c646a807 Mon Sep 17 00:00:00 2001 From: "Ray A. Matsumoto" Date: Mon, 23 Mar 2020 14:53:34 -0500 Subject: [PATCH 4/4] Add analysis to lammps notebook --- tip3p-water-box/files/in.tip3p | 10 +- tip3p-water-box/tip3p_lammps.ipynb | 10346 ++++++++++++++------------- 2 files changed, 5227 insertions(+), 5129 deletions(-) diff --git a/tip3p-water-box/files/in.tip3p b/tip3p-water-box/files/in.tip3p index 0ea31e6..42cd683 100644 --- a/tip3p-water-box/files/in.tip3p +++ b/tip3p-water-box/files/in.tip3p @@ -19,9 +19,15 @@ neighbor 2.0 bin neigh_modify delay 0 every 10 check yes thermo 10 -dump equildump all atom 10 water.lammpstrj +dump nvtdump all atom 100 nvt.lammpstrj timestep 1 -run 10000 +run 5000 log log.equil +undump nvtdump unfix myNVT + +fix myNPT all npt temp 300.0 300.0 100.0 aniso 1.0 1.0 100.0 + +dump nptdump all atom 100 npt.lammpstrj +run 15000 diff --git a/tip3p-water-box/tip3p_lammps.ipynb b/tip3p-water-box/tip3p_lammps.ipynb index 1141be3..da84d57 100644 --- a/tip3p-water-box/tip3p_lammps.ipynb +++ b/tip3p-water-box/tip3p_lammps.ipynb @@ -2,32 +2,24 @@ "cells": [ { "cell_type": "code", - "execution_count": 1, + "execution_count": 4, "metadata": {}, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "/Users/raymatsumoto/foyer/foyer/forcefield.py:433: UserWarning: No force field version number found in force field XML file.\n", - " 'No force field version number found in force field XML file.'\n", - "/Users/raymatsumoto/foyer/foyer/forcefield.py:445: UserWarning: No force field name found in force field XML file.\n", - " 'No force field name found in force field XML file.'\n" - ] - } - ], + "outputs": [], "source": [ "import mbuild as mb\n", + "import matplotlib.pyplot as plt\n", + "import mdtraj as md\n", "\n", "import gmso\n", "from gmso import ForceField\n", "from gmso.external import convert_mbuild\n", - "from gmso.formats.lammpsdata import write_lammpsdata" + "from gmso.formats.lammpsdata import write_lammpsdata\n", + "from gmso.formats.gro import write_gro" ] }, { "cell_type": "code", - "execution_count": 2, + "execution_count": 5, "metadata": {}, "outputs": [], "source": [ @@ -45,7 +37,7 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": 6, "metadata": {}, "outputs": [], "source": [ @@ -60,7 +52,7 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": 7, "metadata": {}, "outputs": [], "source": [ @@ -71,7 +63,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": 8, "metadata": {}, "outputs": [ { @@ -84,7261 +76,7329 @@ "\n", " {} became {}'.format(symbol, symbol_trimmed)\n", " warnings.warn(msg)\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", - " warnings.warn('Non-parametrized site detected {}'.format(site))\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + " warnings.warn('Non-parametrized site detected {}'.format(site))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:516: UserWarning: Non-parametrized site detected \n", " warnings.warn('Non-parametrized site detected {}'.format(site))\n", "/Users/raymatsumoto/installs/gmso/gmso/core/bond.py:51: UserWarning: Non-parametrized Bond detected\n", " warnings.warn(\"Non-parametrized Bond detected\")\n", "/Users/raymatsumoto/installs/gmso/gmso/core/connection.py:86: UserWarning: Non-parametrized Connection detected\n", " warnings.warn(\"Non-parametrized Connection detected\")\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849686792, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4921107512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849687408, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4921107736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849688024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920705544, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849688416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920705264, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849687912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920705320, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849688528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920705488, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849688192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920705600, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920705656, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920705712, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920705768, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920705824, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920705880, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920705936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920705992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706104, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849918752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849675624, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849676128, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706384, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849676072, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706440, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849675792, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706496, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849675960, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706552, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849676240, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706608, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849675512, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706664, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849675456, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706720, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849676184, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706776, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849675176, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706832, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849676016, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706888, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849674728, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920705376, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849673272, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707000, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849674840, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920706944, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849672992, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849674616, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849672768, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849674784, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849688080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4837355984, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849672600, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849590224, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849590112, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589608, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849590056, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589944, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849590000, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589776, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589888, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589720, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589832, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589552, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589664, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708120, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589440, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589496, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589048, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589384, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589272, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589328, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589160, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589216, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588992, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588768, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588824, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588152, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588712, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708848, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588936, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708904, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588880, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920708960, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588264, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920709016, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588208, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920709072, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588544, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920373320, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588600, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920373376, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588320, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920373432, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588488, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920373488, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588376, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920373544, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849588432, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920373600, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849589104, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920373656, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587592, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920373712, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587648, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920373768, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920373824, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920373880, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920373936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920373992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920707056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374104, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587032, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587088, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374384, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586976, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374440, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374496, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374552, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374608, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374664, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374720, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586640, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374776, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586472, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374832, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374888, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374944, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375000, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586248, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849586304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883472, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849587760, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920375952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376120, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844883640, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920374272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882408, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882464, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882296, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882352, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882184, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882240, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376848, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882072, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376904, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882128, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376960, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881960, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920377016, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882016, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920377072, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881848, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920377128, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881904, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920377184, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881736, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920377240, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844882520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920377296, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881624, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920143944, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881792, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144000, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881512, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881568, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920376400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881400, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881456, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881288, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881344, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881176, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881232, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881064, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881120, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880952, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881008, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880840, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880896, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880728, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880784, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880616, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880672, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880504, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880560, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145120, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880392, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880448, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844881680, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880336, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880280, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880224, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880056, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880112, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844818328, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4786031528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4786032536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4786031248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4786031080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145848, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854406952, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145904, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854407008, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920145960, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854407120, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146016, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854407064, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146072, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183048, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146128, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183104, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920144280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183160, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146240, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183216, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146184, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183272, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146352, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183328, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146296, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183384, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146464, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183440, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146408, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183496, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146576, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183552, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146632, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183608, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146688, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4844880168, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146744, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183664, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146800, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183720, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146856, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183832, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146912, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183776, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146968, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147024, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183944, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147080, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184000, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147192, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184056, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147248, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184112, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147360, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184168, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147136, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184224, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147304, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184280, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147472, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184336, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147528, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184392, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147584, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184448, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184504, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184560, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147752, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184616, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147808, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184672, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147864, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184728, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147920, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184784, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920146520, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184840, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920147416, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184896, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920393856, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845184952, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920393912, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185008, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920393968, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185064, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394024, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185120, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394080, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185176, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394136, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185232, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394192, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185288, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394248, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185344, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394304, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185400, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394360, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185456, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394416, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185512, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394472, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185568, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394528, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185624, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394584, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185680, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185736, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185792, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394752, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845183888, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394808, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185904, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394864, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185848, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394920, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186016, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920394976, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186072, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395032, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186128, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395088, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186184, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395144, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186240, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395200, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186296, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395256, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186352, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395312, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186408, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395368, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186464, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920393800, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395424, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395536, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395592, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395648, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395704, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395760, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395816, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395872, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845186968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395928, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845187024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395984, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849479752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396040, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849479808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396096, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849479864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396152, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849479920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396208, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849479976, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396264, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480032, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396320, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480088, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396376, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396432, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396488, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396544, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396600, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396656, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396712, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480592, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396768, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4845185960, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396824, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480648, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396880, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480704, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920396992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480816, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920397048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480760, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920397104, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480872, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920397160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480984, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920397216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481040, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920397272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481096, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920395480, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481152, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920397328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481208, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920397440, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481264, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920397496, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481320, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920397384, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481376, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920397552, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481432, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920397664, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481488, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920397608, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481544, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920397720, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481600, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920397776, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481656, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919304264, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481712, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919304320, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481768, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919304376, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481824, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919304432, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481880, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919304544, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481936, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919304600, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849481992, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919304656, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482048, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919304712, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482104, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919304768, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482160, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919304824, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482216, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919304880, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482272, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919304936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849480928, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919304992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482328, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482440, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305104, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482496, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482552, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482608, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482664, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482384, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305384, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482720, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305440, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482832, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305496, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482888, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305552, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482944, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305608, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483000, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305664, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483056, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305720, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483112, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305776, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483168, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305832, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483224, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919304488, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483280, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305944, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483336, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919305888, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483392, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483448, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306000, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483504, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483560, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483616, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483672, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849483728, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849482776, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849397832, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849397888, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398000, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398056, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849397944, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398112, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398224, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398280, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398336, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398392, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398448, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307120, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398504, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398560, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398616, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398672, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398728, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398784, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398840, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398896, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398952, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399008, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399064, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399120, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399176, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307848, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399232, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307904, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399288, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919306784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399344, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919307960, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849398168, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919308072, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399400, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919308128, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399512, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919308184, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399568, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919308240, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399624, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919308016, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399680, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919275592, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399736, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919275704, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399792, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919275760, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399848, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919275816, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399904, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919275872, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399960, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919275928, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400016, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919275984, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400072, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276040, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400128, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276096, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400184, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400240, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276208, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276320, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400296, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276376, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400464, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276432, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400352, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276488, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276544, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276600, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276656, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276712, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919275648, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276768, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849399456, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276880, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400408, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277104, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849400856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277384, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277440, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277496, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277552, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277608, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277664, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401472, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277720, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401640, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277776, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277832, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277888, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849258568, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919277944, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849258624, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278000, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849258680, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849258736, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849258792, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849258848, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919276824, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849258904, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849258960, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259016, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259072, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259128, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849401696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259184, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259240, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259296, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259408, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259464, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919279008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919279064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919279120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919279176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919279232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919279400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919279288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919279456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919279512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919279568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920225864, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919278280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920225920, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919279344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920225976, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226032, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849259352, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226144, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260472, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226200, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226256, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260640, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226312, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226088, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226368, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226480, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226536, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226592, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260976, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226648, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261032, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226704, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261088, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226760, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226816, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226872, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226928, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226984, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227040, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227096, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920226424, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261536, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849260528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227152, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227264, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227320, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227376, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261592, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227432, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261816, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227488, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261704, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227544, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261984, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227208, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262040, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227600, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262096, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227712, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262152, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227768, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262208, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227824, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262264, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227880, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261872, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849261760, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262376, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262432, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228104, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262488, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262544, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575176, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575232, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575288, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228384, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575344, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228440, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575400, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228496, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575456, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228552, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575512, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228608, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575568, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228664, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849262320, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228720, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575624, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920227656, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575680, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228776, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575736, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228888, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575848, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228944, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575904, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920229000, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575960, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920229056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576016, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920229112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576072, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920229168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576128, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920229224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576184, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920229280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576240, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920229336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576296, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920229392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576352, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920229448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576408, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920229504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576464, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920229560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920229616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920229672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920229728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854575792, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920229784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920229840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920228832, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919521352, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919521408, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919521520, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919521576, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919521632, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919521688, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919521744, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919521800, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919521968, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919521856, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522080, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522136, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577472, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522192, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522248, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522304, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577640, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522360, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854576744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919521464, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919521912, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522472, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522528, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522584, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577976, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578032, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578088, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522752, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522808, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522864, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522920, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522416, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919522976, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523088, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523144, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523032, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578592, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578648, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523200, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523312, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523368, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523424, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854577752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523480, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578816, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523536, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578928, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523592, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578704, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523648, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578872, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523704, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854579152, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523760, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854681672, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523816, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854681728, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523872, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854681784, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523928, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854579040, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523256, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854578984, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919523984, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854681840, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524096, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854681896, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524040, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682008, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524152, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854681952, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524264, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682064, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524320, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682120, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524376, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682176, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524208, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682288, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524432, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682344, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524544, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682400, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524600, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682456, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524656, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682512, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524712, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682568, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524768, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682624, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524824, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682680, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524880, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682736, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682792, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682848, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919524488, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682904, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919525048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682960, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919525160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683016, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919525216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683072, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919525272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683128, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919525328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683184, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919394376, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919394432, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919394488, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919394600, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919394544, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919394824, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919394880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919394936, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919394992, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395048, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395104, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919394712, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683240, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919394656, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683296, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683352, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683408, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683464, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395384, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395440, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395496, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395552, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395608, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395664, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395776, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395832, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854683968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395888, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395944, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396000, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684472, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919395720, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684640, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854684976, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685032, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685088, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397120, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685592, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397512, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397568, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397624, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397680, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397736, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397792, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397848, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397904, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919397960, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919398016, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919398072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919398128, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919398184, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919398240, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919398296, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919398352, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -7346,153 +7406,151 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854685648, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920520776, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849135688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920520832, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849135856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521000, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849135744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920520888, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849135912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849135968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919396560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4854682232, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920520944, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849135800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136472, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136640, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136976, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522120, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137032, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920521616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137088, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137592, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137648, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137704, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522848, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137760, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522904, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137816, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522960, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137872, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523016, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137928, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523072, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849137984, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523128, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138040, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523184, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138096, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523240, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138152, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523296, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138208, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523352, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138264, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523408, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138320, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523464, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138376, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523520, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138432, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523576, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138488, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523632, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138544, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523688, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138600, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523744, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138656, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523800, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138712, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523856, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138768, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523912, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138824, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920523968, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138880, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920524024, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138936, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920524080, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849138992, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920524136, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139048, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920524192, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139104, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920524248, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139160, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920524304, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139216, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920524360, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139272, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920524416, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139328, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920524472, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139384, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920524528, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139440, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920524584, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139496, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920524640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139552, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920524696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139608, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920524752, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849139664, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849037208, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920522232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -7500,149 +7558,143 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849037264, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849037096, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920557640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849037152, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920557696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849037040, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920557808, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036872, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920557920, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036928, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920557976, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036760, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558032, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849136360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558088, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036816, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558144, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036648, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558200, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036984, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920557752, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920557864, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036592, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558312, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558368, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558424, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558480, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558256, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558536, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558648, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036088, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558704, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558760, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035976, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558816, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036032, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558872, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558928, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558984, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559040, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559096, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849036704, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559152, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035640, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920558592, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559208, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559320, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559376, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035472, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559432, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559488, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559544, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559600, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559656, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559712, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559768, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559824, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559880, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560104, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034408, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560384, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034464, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560440, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034296, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920559264, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034352, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560496, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034184, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560608, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034240, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560664, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034072, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560720, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034128, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560776, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033960, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560832, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849034016, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560888, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033848, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560944, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033904, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920561000, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033736, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920561056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033792, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920561112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033624, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920561168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033680, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920561224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033512, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920561280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033568, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920561336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033400, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920561392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033456, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920561448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033288, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849033344, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920561504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -7650,131 +7702,131 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920561560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920561616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920475720, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920475776, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849035696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920475888, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920475944, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476000, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920560552, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849000968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920475832, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001472, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001640, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001976, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002032, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002088, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477120, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002592, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002648, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002704, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002760, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002816, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477848, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002872, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477904, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002928, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920477960, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849002984, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478016, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003040, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478072, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003096, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478128, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003152, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478184, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003208, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478240, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003264, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478296, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003320, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478352, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003376, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478408, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003432, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478464, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003488, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478520, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849001136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478576, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003544, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478632, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003656, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478688, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003712, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478744, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003768, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478800, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003824, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478856, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003880, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478912, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003936, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920478968, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003992, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920479024, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004048, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920479080, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -7782,137 +7834,105 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004104, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004160, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004216, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004272, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004384, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004440, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004496, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086536, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849003600, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086592, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849004328, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086648, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086704, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086816, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086872, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086928, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920479136, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086984, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920479192, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087040, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920479304, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087096, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920479248, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087152, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920479416, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087208, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920479472, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087264, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920479528, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087320, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920479584, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087376, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920479640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087432, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920479696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087488, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920476224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087544, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920479360, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087600, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406144, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087656, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406088, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087712, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406256, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087768, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406312, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087824, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406368, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087880, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406424, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087936, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406200, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849087992, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406480, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088048, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406592, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088104, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406648, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088160, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406704, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088216, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406760, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088272, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406816, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088328, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406872, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088384, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406928, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088440, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406984, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088496, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407040, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088552, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407096, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088608, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407152, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088664, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407208, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088720, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407264, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088776, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407320, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088832, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407376, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088888, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407432, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849088944, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407488, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089000, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407544, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089056, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407600, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089112, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407656, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089168, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407712, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089224, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407768, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089280, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407824, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089336, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407880, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089392, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089448, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920407992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089504, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089560, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408104, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089616, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089672, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089728, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -7920,129 +7940,113 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089784, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089840, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089896, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090008, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090064, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090120, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090176, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090232, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090288, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849086760, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849089952, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408384, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090400, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408496, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090456, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408552, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090512, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408608, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443464, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408664, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408720, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408776, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4849090344, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920406536, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408440, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408888, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408944, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409000, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444472, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444640, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920409952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920410008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920410064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848444976, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919844936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445032, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919844992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445088, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845104, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845384, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845440, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845496, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445592, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845552, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445648, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845608, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445704, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845664, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445760, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845720, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445816, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845776, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445872, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845832, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445928, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845888, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848445984, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919845944, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446040, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846000, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446096, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -8050,125 +8054,121 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446152, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446208, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446264, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446320, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446432, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446488, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446544, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446600, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4920408832, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446656, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446712, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848443800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446376, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446824, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446880, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446936, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446992, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848447048, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848447104, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848447160, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847120, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848447216, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848447272, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848447328, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848447384, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848447440, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848631880, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848631936, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848631992, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632048, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632104, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632160, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632216, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632272, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847848, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632328, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847904, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632384, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919847960, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632440, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848016, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632496, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848072, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632552, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848128, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632608, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848184, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632664, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848240, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632720, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848296, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632776, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848352, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632832, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848408, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632888, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848464, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848632944, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848520, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633000, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848576, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633056, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848632, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633112, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848688, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633168, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848744, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633224, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848800, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633280, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848856, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633336, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919848912, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633392, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919767112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633448, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919767168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633504, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919767224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848446768, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919767280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633560, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919767336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633616, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919767392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633672, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633784, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633840, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919767448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -8176,119 +8176,105 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633896, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633952, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634008, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634064, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634176, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634232, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634288, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919767504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634344, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919767560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634400, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919767616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634456, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919767672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848633728, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919767784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634120, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919767840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634568, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919767896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634624, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919767952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634680, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919846840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634736, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634792, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634848, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919767728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634904, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634960, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635016, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635072, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635128, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635184, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635240, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848634512, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635296, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635408, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635464, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768120, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768848, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768960, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769016, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769072, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769128, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848549960, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769184, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550016, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769240, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550072, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769296, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550128, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769352, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550184, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769408, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550240, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769464, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550296, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769520, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550352, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769576, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550408, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769632, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550464, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769688, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769744, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769800, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769856, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769912, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919769968, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770024, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919768904, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770080, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848550968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770192, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551024, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770248, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -8296,105 +8282,109 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770304, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770360, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770416, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770472, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770584, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551472, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770752, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770808, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770864, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551640, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770136, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848635352, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770528, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770976, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919771032, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919771088, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919705672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919705728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551976, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919705784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552032, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919705840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552088, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919705896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919705952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706120, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552592, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552648, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552704, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552760, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552816, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552872, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552928, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848552984, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553040, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706848, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848551808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706904, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553096, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919706960, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553208, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707016, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553264, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707072, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553320, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707128, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553376, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707184, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553432, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707240, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553488, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707296, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553544, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707352, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553600, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707408, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553656, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707464, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553712, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707520, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553768, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707576, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553824, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707632, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553880, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707688, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -8402,99 +8392,97 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553936, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707744, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707800, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484592, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707912, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707856, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484648, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708024, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484704, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708080, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484760, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708136, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484816, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708192, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848553152, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919770920, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484872, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708248, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484928, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919707968, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708304, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485040, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708360, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485096, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708472, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485152, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708528, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485208, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708584, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485264, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485320, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485376, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708752, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485432, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708808, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485488, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708864, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485544, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708920, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485600, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708976, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485656, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919709032, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848484984, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919709088, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485712, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919709144, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485824, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919709200, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485880, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919709256, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485936, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919709312, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485992, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919709368, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486048, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919709424, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486104, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919709480, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486160, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919709536, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486216, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919709592, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486272, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919709648, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486328, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919824456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486384, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919824512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486440, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919824568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486496, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919824624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486552, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919824680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486608, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919824736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486664, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919824792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486720, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919824848, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486776, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919824904, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486832, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919824960, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486888, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848486944, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919708416, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -8502,107 +8490,99 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487000, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487056, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825016, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487112, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825128, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487224, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825184, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487280, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825296, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487336, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825352, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487392, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825408, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487448, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825464, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487504, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825520, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848485768, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825576, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487168, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825240, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487616, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825632, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487672, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825072, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487728, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825688, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487784, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825800, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487840, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825856, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487896, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825912, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487952, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825968, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848488008, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826024, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848488064, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826080, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848488120, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826136, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848488176, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826192, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848488232, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826248, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848488288, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826304, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848488344, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826360, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848488400, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826416, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848320584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826472, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848320640, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826528, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848320696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826584, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848320752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848320808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848320864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826752, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848487560, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826808, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848320920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826864, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848320976, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826920, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321032, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919826976, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827032, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827088, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827144, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827200, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321088, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827256, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827312, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827368, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827424, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321592, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827480, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321648, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827536, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321704, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827592, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321760, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321816, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321872, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321928, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827648, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -8610,93 +8590,91 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321984, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322040, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827704, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322152, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827760, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322096, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827816, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322264, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827928, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322320, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827984, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322376, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919827872, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322432, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919828040, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322488, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919828096, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322544, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919828152, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322208, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919828208, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322600, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919828264, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322656, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919828320, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322712, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919828376, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322768, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919828432, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322824, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322880, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322936, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848322992, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323048, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323104, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323160, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323216, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323272, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323328, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323384, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323440, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323496, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323552, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323608, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323664, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323720, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918698952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323776, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323832, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323888, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699120, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848323944, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324000, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324056, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324112, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324168, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324224, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324280, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324336, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4919825744, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324392, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -8704,87 +8682,95 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324448, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324504, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848324560, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570496, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699848, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570552, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699960, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848321424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700016, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570608, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700072, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570440, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700128, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570720, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700184, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570776, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700240, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570832, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570888, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918699904, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570944, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700352, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571000, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700408, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571056, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700464, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571112, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700520, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571168, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700576, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571224, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700632, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571280, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700688, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571336, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700744, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571392, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700800, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571448, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700856, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571504, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700912, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571560, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700968, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571616, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701024, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571672, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701080, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571728, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701136, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571784, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701192, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571840, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701248, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571896, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701304, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848571952, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701360, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572008, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701416, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572064, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701472, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572120, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701528, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572176, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701584, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848570664, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572232, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572344, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701752, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572400, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701808, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572456, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701864, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572512, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701920, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918701976, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918702032, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918775880, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918775936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -8792,87 +8778,81 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572568, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918775992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572624, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572680, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572792, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776104, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572736, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572848, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572904, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572960, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776384, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573016, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776440, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573072, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776496, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573128, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776552, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573184, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776608, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573240, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776664, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573296, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776720, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573352, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776776, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573408, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776832, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573464, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776888, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918776944, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777000, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848573968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848574024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848574080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848574136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848574192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848574248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848574304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848574360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848574416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357448, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357504, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918777952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357560, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357616, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357672, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357728, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357784, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -8880,85 +8860,97 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357840, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778120, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357896, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358008, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848357952, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358120, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358176, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358232, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918700296, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358288, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848572288, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358344, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358064, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358456, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358512, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778848, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358568, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358624, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778904, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358680, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918779016, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358736, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918779072, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358792, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918779128, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358848, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918779184, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358904, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918779240, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358960, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918779296, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359016, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918779352, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359072, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918779408, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359128, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918779464, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359184, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918779520, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359240, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918779576, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359296, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918779632, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359352, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918779688, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359408, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918779744, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359464, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918779800, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918779856, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918685768, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918685824, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918685880, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918685936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918685992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686104, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848359968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686216, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686272, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686328, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686384, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686440, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686496, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -8966,81 +8958,93 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686608, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686664, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686776, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686832, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686888, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686944, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918778960, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687000, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918686720, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848358400, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360640, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360976, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848361032, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848361088, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848361144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848361200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848361256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848361312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848361368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848361424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688120, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258408, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848360472, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258464, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688848, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688904, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918688960, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -9048,89 +9052,87 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258296, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918689016, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258352, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918689072, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258240, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918689128, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258128, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918689240, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257960, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918689296, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258016, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918689352, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257848, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918689408, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257904, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918689184, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257736, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918689464, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258184, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918689520, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848258072, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918689576, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257624, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918689632, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257680, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918689688, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257512, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918689744, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257568, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918632520, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257400, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918687056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257456, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918632576, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257288, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918632632, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257344, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918632688, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257176, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918632800, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257232, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918632856, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257064, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918632912, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257120, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918632968, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256952, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633024, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257008, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633080, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256840, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633136, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256896, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633192, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256728, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633248, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256784, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633304, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256616, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633360, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256672, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633416, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256504, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633472, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256560, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633528, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256392, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633584, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256448, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256280, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256336, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633752, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256168, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633808, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256224, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633864, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256056, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633920, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256112, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255944, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918633976, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -9138,85 +9140,79 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848256000, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255832, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634032, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255720, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634088, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255888, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634200, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255608, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634312, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255664, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634144, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255496, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634368, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255776, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634424, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255552, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634256, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255384, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634480, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255440, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634536, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255272, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634592, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255328, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634648, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255160, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634704, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255216, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634760, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255048, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634816, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848255104, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634872, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634928, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918634984, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635040, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635096, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635152, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848257792, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635208, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635264, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635320, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259592, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635376, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259648, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635432, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259704, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635488, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259760, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635544, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259816, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635600, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259872, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635656, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259928, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635712, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259984, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635768, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260040, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635824, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260096, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635880, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260152, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260208, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918635992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260264, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260320, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260376, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918636048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -9224,81 +9220,77 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260432, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260488, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260544, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918636104, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260656, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918636160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260600, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918636216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260712, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918636328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260768, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918636384, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260824, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918636272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260880, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918636440, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260936, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918636496, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848260992, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918607944, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848259480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608000, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261048, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261160, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261216, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261272, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261328, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261384, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261440, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261496, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261552, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261608, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261664, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261720, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261776, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261832, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261888, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261944, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262000, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918608952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262056, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262112, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262168, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609120, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262224, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262280, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262336, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262392, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918632744, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262448, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262504, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -9306,83 +9298,75 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262560, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262616, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262672, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262728, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262840, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262896, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262952, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609848, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848263008, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609904, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848262784, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609960, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848263064, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610016, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848263120, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610072, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218184, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610128, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218240, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610184, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218296, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610240, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218352, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610296, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218408, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610352, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218464, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610408, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610464, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610520, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610576, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610632, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610688, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918609400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610744, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610856, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848261104, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610912, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848218968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610968, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611024, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611080, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611136, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611192, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611248, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611304, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611360, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219472, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219528, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219584, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219640, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611416, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -9390,83 +9374,75 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219752, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611472, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611528, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219976, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220032, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611584, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220088, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611752, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611808, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611864, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611920, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918610800, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918611696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917952584, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917952696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917952752, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917952808, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220592, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917952864, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220648, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917952920, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220704, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917952976, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220760, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953032, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220816, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953088, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848219864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953144, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220872, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953200, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220984, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953256, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221040, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953312, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221096, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953368, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221152, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953424, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221208, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953480, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221264, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953536, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221320, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953592, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221376, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953648, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221432, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953704, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221488, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953760, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221544, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953816, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221600, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953872, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221656, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953928, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221712, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221768, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221824, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221880, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917953984, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -9474,141 +9450,153 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221936, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954040, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954096, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848221992, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954152, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848222160, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954264, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848222048, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954208, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848222104, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954320, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091208, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954376, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091264, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954432, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091320, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954488, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091376, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954544, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848220928, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954600, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091432, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954656, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091488, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954712, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091544, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954768, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091656, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954824, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091712, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954880, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091768, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091824, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917954992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091880, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091936, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955104, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091992, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092048, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092104, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092160, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917952640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092216, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092272, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955440, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092328, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955496, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092384, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955552, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092440, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955608, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092496, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955664, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092552, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955720, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092608, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955776, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092664, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955832, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092720, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955888, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955944, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917956000, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092776, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917956056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092832, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917956168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092888, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917956224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093000, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917956280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848092944, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917956112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093056, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917956336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093112, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917956392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093168, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917956448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093224, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917956504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093280, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917956560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093336, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918030408, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093392, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918030464, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093448, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918030520, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093504, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918030576, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093560, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918030632, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093616, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918030688, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093672, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918030744, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093728, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918030800, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093784, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918030856, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093840, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918030912, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093896, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918030968, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848093952, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031024, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094008, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031080, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094064, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031136, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848091600, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031192, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094120, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031248, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094232, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031304, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094288, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031360, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094344, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031416, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094400, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031472, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094456, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031528, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094512, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031584, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094568, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094624, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094680, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031752, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -9616,75 +9604,77 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094736, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031808, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094792, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031864, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094848, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031920, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094960, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917955384, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848095016, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032032, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848095072, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032088, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094904, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918031976, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848095128, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032200, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848095184, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032256, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848156744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032312, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848156800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032368, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848156856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032424, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848156912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032480, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848156968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032536, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032592, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032648, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032704, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032760, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032816, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032872, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032928, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032984, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157472, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033040, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033096, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033152, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157640, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033208, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033264, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033320, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033376, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033432, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033488, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848157976, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033544, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158032, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033600, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158088, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033656, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033712, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033768, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -9692,133 +9682,133 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033824, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033880, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848094176, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918034048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918033936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918034104, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918034160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158592, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918034216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158648, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918034272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158704, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918034328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158760, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918032144, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158816, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918034384, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158872, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917964928, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158928, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917964984, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158984, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965040, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159040, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965096, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159096, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965152, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159152, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965208, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159208, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965264, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159264, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965320, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159320, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965376, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159376, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965432, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159432, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965488, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159488, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965544, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159544, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965600, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159600, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965656, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159656, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965712, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159712, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965768, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159768, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965824, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159824, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965880, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159880, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159936, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917965992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848159992, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160048, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966104, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160104, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160160, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160272, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160216, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160328, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966384, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160384, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966440, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160440, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966496, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160496, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966552, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160552, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966608, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160608, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966664, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160664, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966720, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848160720, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966776, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4848158536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966832, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847935560, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966888, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847935616, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917966944, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847935728, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967000, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847935784, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967056, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847935840, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917964872, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847935896, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967112, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847935952, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936008, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936064, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936120, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936176, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967168, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936232, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936288, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936344, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936400, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936456, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936512, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -9826,133 +9816,133 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936568, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936624, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936680, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936792, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917968064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936736, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917968008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936848, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917968120, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936904, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917968176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847936960, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917968232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937016, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917968288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937072, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917968344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937128, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917968400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937184, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917968456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937240, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917968512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937296, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917968568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937352, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917968624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937408, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917968680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937464, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917968736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917968792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917968848, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917882952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883120, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847937968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938472, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917967504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883848, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938640, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883904, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884016, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884072, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884128, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884184, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884240, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847938976, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884296, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939032, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884352, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939088, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884408, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884464, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917883960, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884520, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884632, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884688, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884744, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884800, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847939536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884856, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968328, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884912, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968384, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884968, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968440, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885024, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968496, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885080, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968552, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885136, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968608, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885192, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968664, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885248, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968720, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885304, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968776, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885360, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968832, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885416, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -9960,131 +9950,125 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968888, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847968944, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847935672, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885472, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969000, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885528, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969056, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885584, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969168, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969224, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969280, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885752, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969336, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885808, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969392, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885864, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969448, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885920, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969504, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917885976, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969560, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886032, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969112, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886088, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969616, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886144, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969728, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886200, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969784, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886256, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969840, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886312, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969896, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886368, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969952, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886424, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970008, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886480, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970064, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886536, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970120, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886592, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970176, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886648, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970232, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886704, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970288, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886760, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970344, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886816, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970400, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886872, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970456, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917886928, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970512, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917809224, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970568, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917809280, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970624, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917809336, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970680, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917809392, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970736, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917809448, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970848, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917809560, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970904, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917884576, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970792, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917809504, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847970960, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917809616, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971016, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917809728, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971072, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917809784, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971128, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917809840, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971184, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917809896, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971240, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917809952, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971296, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810008, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971352, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810064, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971408, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810120, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971464, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810176, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971520, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810232, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847969672, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810288, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971576, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810344, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971688, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810400, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971744, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810456, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971800, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810512, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971856, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917809672, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971912, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810568, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971968, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810680, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847972024, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810736, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847972080, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810792, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847972136, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810848, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847972192, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810904, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847972248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810960, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847972304, type None, name Bond> detected\n", - " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538248, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811016, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -10092,127 +10076,133 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538304, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811072, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811128, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538360, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811184, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538416, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811296, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847971632, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811352, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538528, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811240, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538472, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811408, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538640, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811464, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538696, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811520, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538752, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917810624, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538808, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811576, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538864, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811688, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538920, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811744, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538976, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811800, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539032, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811856, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539088, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811912, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539144, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811968, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539200, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812024, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539256, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812080, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539312, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812136, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539368, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812192, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539424, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812248, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539480, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812304, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539536, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812360, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539592, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812416, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539648, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812472, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539704, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812528, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539760, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812584, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539816, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539872, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539928, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812752, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847539984, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812808, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540040, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812864, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540096, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812920, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540152, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917812976, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540320, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917813088, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540264, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917813144, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540208, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917813200, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540376, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917813032, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540432, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918239304, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540488, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918239360, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540544, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918239416, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540600, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918239472, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540656, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918239528, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540712, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918239584, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847538584, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918239640, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540768, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918239696, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540880, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918239752, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540936, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918239808, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847540992, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918239864, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541048, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918239920, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541104, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918239976, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541160, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240032, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541216, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240088, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541272, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240144, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541328, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240200, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541384, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240256, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541440, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240312, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541496, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240368, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541552, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240424, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541608, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240480, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541664, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240536, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240592, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240648, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" ] }, @@ -10220,72 +10210,86 @@ "name": "stderr", "output_type": "stream", "text": [ - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541720, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240704, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240760, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240816, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541776, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240872, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541832, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240984, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541944, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241040, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847542000, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918240928, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847541888, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241096, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847542056, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241152, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847542112, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241208, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847542168, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241264, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847542224, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241320, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644568, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241376, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644624, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241432, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644456, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241488, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644512, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241544, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644344, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241600, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644400, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241656, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644232, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241712, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644288, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241768, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644120, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241824, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644176, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241880, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644008, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241936, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847644064, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918241992, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643896, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918242048, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643952, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918242104, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643784, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918242160, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643840, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918242216, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643672, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918242272, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643728, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918242328, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643560, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918242384, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643616, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918242440, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643448, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918242496, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643504, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4917811632, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", - "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4847643336, type None, name Bond> detected\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918242608, type None, name Bond> detected\n", " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918242552, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n", + "/Users/raymatsumoto/installs/gmso/gmso/core/topology.py:477: UserWarning: Non-parametrized Connection <2-partner Connection, id 4918242720, type None, name Bond> detected\n", + " warnings.warn('Non-parametrized Connection {} detected'.format(c))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ "/Users/raymatsumoto/installs/gmso/gmso/core/box.py:16: UserWarning: Lengths are assumed to be in nm\n", " warnings.warn('Lengths are assumed to be in nm')\n" ] @@ -10299,7 +10303,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": 9, "metadata": {}, "outputs": [], "source": [ @@ -10326,7 +10330,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": 10, "metadata": {}, "outputs": [ { @@ -10334,13 +10338,19 @@ "output_type": "stream", "text": [ "/Users/raymatsumoto/installs/gmso/gmso/formats/lammpsdata.py:82: UserWarning: Orthorhombic box detected\n", - " warnings.warn(\"Orthorhombic box detected\")\n" + " warnings.warn(\"Orthorhombic box detected\")\n", + "/Users/raymatsumoto/installs/gmso/gmso/formats/gro.py:170: UserWarning: Topology contains some negative positions. Translating in order to ensure all coordinates are non-negative.\n", + " warnings.warn('Topology contains some negative positions. Translating '\n", + "/Users/raymatsumoto/installs/gmso/gmso/formats/gro.py:128: NotYetImplementedWarning: Residue information is not currently stored or written to GRO files.\n", + " NotYetImplementedWarning)\n" ] } ], "source": [ "# Write out LAMMPS Files\n", - "write_lammpsdata(top, 'data.tip3p')" + "write_lammpsdata(top, 'data.tip3p')\n", + "# Write out GRO Files\n", + "write_gro(top, 'tip3p.gro')" ] }, { @@ -10360,6 +10370,88 @@ "# Run the lammps simulation\n", "!lmp_serial < files/in.tip3p" ] + }, + { + "cell_type": "code", + "execution_count": 11, + "metadata": {}, + "outputs": [], + "source": [ + "# Load in trajectory and gro file with MDTraj\n", + "trj = md.load_lammpstrj('npt.lammpstrj', top='tip3p.gro')" + ] + }, + { + "cell_type": "code", + "execution_count": 12, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Text(0, 0.5, 'Density (kg/m^3)')" + ] + }, + "execution_count": 12, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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\n", + "text/plain": [ + "
" + ] + }, + "metadata": { + "needs_background": "light" + }, + "output_type": "display_data" + } + ], + "source": [ + "# Calculate Density\n", + "density = md.density(trj)\n", + "plt.plot(trj.time, density)\n", + "plt.xlabel('Time')\n", + "plt.ylabel('Density (kg/m^3)')" + ] + }, + { + "cell_type": "code", + "execution_count": 32, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "(0, 3)" + ] + }, + "execution_count": 32, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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\n", + "text/plain": [ + "
" + ] + }, + "metadata": { + "needs_background": "light" + }, + "output_type": "display_data" + } + ], + "source": [ + "# Calculate O-O RDF\n", + "oo = trj.topology.select_pairs(selection1='name O', selection2='name O')\n", + "r, g_r = md.compute_rdf(trj, pairs=oo)\n", + "plt.plot(r, g_r)\n", + "plt.ylim((0,3))" + ] } ], "metadata": {