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nextflow lint: add -fail-on-warnings flag #7038

@mashehu

Description

@mashehu

New feature

nextflow lint should exit with status 1 if there are warnings and a -fail-on-warnings flag is set.

Use case

I would like to have a bit stricter linting in the CI for the nf-core template. Currently, I can only do this by adding a manual parsing step to check for warnings in the output.

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