funannotate2-addons/pyproject.toml at main · nextgenusfs/funannotate2-addons · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[project]
name = "funannotate2_addons"
version = "26.3.7"
description = "funannotate2-addons: scripts/methods to enhance functional annotation of eukaryotic genomes"
readme = {file = "README.md", content-type = "text/markdown"}
authors = [
    {name = "Jon Palmer", email = "nextgenusfs@gmail.com"}
]
requires-python = ">=3.7.0"
dependencies = [
    "packaging",
    "requests",
    "gfftk",
    "gb-io"
]
license = {file = "LICENSE.md"}
classifiers = [
    "Development Status :: 4 - Beta",
    "License :: OSI Approved :: BSD License",
    "Programming Language :: Python",
    "Operating System :: Unix",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
keywords = ["bioinformatics", "genome", "annotation"]

[project.optional-dependencies]
dev = [
    "pytest>=7.0.0",
    "pytest-cov>=4.0.0",
    "black>=23.0.0",
    "isort>=5.0.0",
]

[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = "test_*.py"
python_classes = "Test*"
python_functions = "test_*"
addopts = "-v --cov=funannotate2_addons"

[project.urls]
Homepage = "https://github.com/nextgenusfs/funannotate2-addons"
Repository = "https://github.com/nextgenusfs/funannotate2-addons.git"

[project.scripts]
f2a = "funannotate2_addons.__main__:main"

[tool.hatch.build]
include = [
  "funannotate2_addons/*.py",
  "README.md",
  "LICENSE.md"
]
exclude = [
  "tests/*",
]

[tool.black]
line-length = 100
target-version = ['py38']
include = '\.pyi?$'
extend-exclude = '''/(\n  # Directories
  \.git
  | \.hg
  | \.mypy_cache
  | \.tox
  | \.venv
  | _build
  | buck-out
  | build
  | dist
)/
'''

[tool.isort]
profile = "black"
line_length = 100