From 1a0eab9693f2fbf96c16d72f9bc069a19f25d0c4 Mon Sep 17 00:00:00 2001 From: vicbeg Date: Wed, 15 Apr 2026 13:51:42 +0100 Subject: [PATCH] Further subsetted the testdata files --- samplesheet/samplesheet_SHAPE_RT-stop.csv | 3 +++ 1 file changed, 3 insertions(+) create mode 100644 samplesheet/samplesheet_SHAPE_RT-stop.csv diff --git a/samplesheet/samplesheet_SHAPE_RT-stop.csv b/samplesheet/samplesheet_SHAPE_RT-stop.csv new file mode 100644 index 000000000..65aeb2d4a --- /dev/null +++ b/samplesheet/samplesheet_SHAPE_RT-stop.csv @@ -0,0 +1,3 @@ +sample,sample_id,fastq_1,fastq_2,method,principle,cell_line,condition,replicate,organism,pH,adapter_3p,adapter_5p,umi_pattern +HEK293T_untreated_r1,GSM4333255,https://github.com/nf-core/test-datasets/raw/refs/heads/rnastructurome/testdata/SHAPE_RT-stop/GSM4333255.R1.HEK293T_untreated_r1.trim.top1.fastq.gz,,SHAPE,RT-stop,HEK293T,untreated,1,Homo sapiens,7.5,,, +HEK293T_treated_r1,GSM4333256,https://github.com/nf-core/test-datasets/raw/refs/heads/rnastructurome/testdata/SHAPE_RT-stop/GSM4333256.R1.HEK293T_treated_r1.trim.top1.fastq.gz,,SHAPE,RT-stop,HEK293T,treated,1,Homo sapiens,7.5,,,