Title
Neurosynth Compose: Ecosystem for Reproducible Meta-Analyses
Short description and the goals for the OHBM BrainHack
We are aiming to make meta-analyses more systematic, reproducible, and overall less painful with an online interface and lots of pre-ingested data for you to use freely!
Our platform now hosts over 30,000 neuroimaging papers that report coordinates, making the arduous phase of transcribing coordinates simpler than ever.
We have a number of projects to work on, whether it's your first time programming or if you're a seasoned veteran.
Novice
- Test out our sleuth file import feature (try to break it and give feedback)
- Work on a script to add DOI/PMID to the sleuth files automatically
- Use our tutorial and give feedback
- Help validate paper-extracted information from GPT
Intermediate
- write code to create figures to do some exploratory data analysis/Validation on data we've ingested.
- formalize the DOI/PMID adding script into a function in NiMARE
- profile memory consumption in running the NiMARE reports CBMA module
- add documentation to publang: interface to extract information from academic papers (https://github.com/adelavega/publang)
Advanced
- redo the cognitive atlas python package using a more modern API generator
- help create a script to extract references to papers within meta-analysis papers
- create a NIDM to NiMARE function
- Prompt Engineering/workflow design for publang to extract task information
- representing participant demographics in our database.
Link to the Project
https://github.com/neurostuff/neurostore
Image/Logo for the OHBM brainhack website
https://github.com/neurostuff/neurostore/blob/master/compose/neurosynth-frontend/public/static/synth.png
Project lead
James Kent @jdkent jdkent
Alejandro De La Vega @adelavega neurozorro
Julio Peraza @JulioAPeraza N/A
Main Hub
Seoul
Link to the Project pitch
No response
Other hubs covered by the leaders
Skills
- None
- Ran a meta-analysis before (using any technology)
- written a bash script
- read in files with python
- use plotting libraries with python
- created a pull request using git/github
Recommended tutorials for new contributors
No response
Good first issues
No response
Twitter summary
If you're interested in or learning about meta-analyses, AI, data engineering, and everything in between, come checkout Neurosynth Compose! We have projects for every skill level.
Short name for the Discord chat channel (~15 chars)
neurosynth-compose
Please read and follow the OHBM Code of Conduct
Title
Neurosynth Compose: Ecosystem for Reproducible Meta-Analyses
Short description and the goals for the OHBM BrainHack
We are aiming to make meta-analyses more systematic, reproducible, and overall less painful with an online interface and lots of pre-ingested data for you to use freely!
Our platform now hosts over 30,000 neuroimaging papers that report coordinates, making the arduous phase of transcribing coordinates simpler than ever.
We have a number of projects to work on, whether it's your first time programming or if you're a seasoned veteran.
Novice
Intermediate
Advanced
Link to the Project
https://github.com/neurostuff/neurostore
Image/Logo for the OHBM brainhack website
https://github.com/neurostuff/neurostore/blob/master/compose/neurosynth-frontend/public/static/synth.png
Project lead
James Kent @jdkent jdkent
Alejandro De La Vega @adelavega neurozorro
Julio Peraza @JulioAPeraza N/A
Main Hub
Seoul
Link to the Project pitch
No response
Other hubs covered by the leaders
Skills
Recommended tutorials for new contributors
No response
Good first issues
No response
Twitter summary
If you're interested in or learning about meta-analyses, AI, data engineering, and everything in between, come checkout Neurosynth Compose! We have projects for every skill level.
Short name for the Discord chat channel (~15 chars)
neurosynth-compose
Please read and follow the OHBM Code of Conduct