robot convert from OWL to OBO drops AnnotationProperties and NamedIndividuals...

[edwardsnj]

• ROBOT version 1.9.8 (docker-based)
• Command: robot convert --input "GNOme.owl" --format obo --output "GNOme.obo"

I get term stanzas in the OBO file like this:

[Term]
id: GNO:10000273
name: glycan of molecular weight 164.07 Da
def: "A glycan characterized by underivitized molecular weight of 164.07 Daltons." []
is_a: GNO:00000001 ! glycan
property_value: GNO:00000021 GNO:00000012
property_value: GNO:00000024 GNO:00000001

Which is correct, but the AnnotationProperties (GNO:00000021 and GNO:00000024) are not output as their own stanzas (with id, name, def, etc.) and neither are NamedIndividuals (GNO:00000012, ...).

Perhaps this is as intended due to OBO format restrictions, but I was surprised they were missing.

Thanks!

[matentzn]

My instinct says this issue belongs here: https://github.com/owlcollab/oboformat/issues

And my experience says it should be shared with with the #obo-format channel on slack for maximum visibility

[edwardsnj]

I have reposted this issue as oboformat ticket #154. If it gets picked up there, I'll close this one.

Thanks @matentzn!