Update submodule pointer (#220)

* Update submodule pointer
- This will include voltage conversion equations in the docs

* Update 0.4.5

- This requires changing workflows and some information in the docs because NeuropixelsVxyzHeadstage was changed to HeadstageNeuropixelsVxyz in the src code

Author: cjsha

articles/getting-started/onix-acquisition.md

@@ -32,9 +32,9 @@ Linking the data I/O operator to devices when using two identical headstages or
 miniscopes involves an additional step: renaming a configuration operator.
 Suppose you want to stream orientation data from two Neuropixels 2.0 Headstages
 through using two <xref:OpenEphys.Onix1.PolledBno055Data> operators. By default,
-the <xref:OpenEphys.Onix1.ConfigureNeuropixelsV2eHeadstage> operators are both
-named "NeuropixelsV2eHeadstage". This causes their devices to also have
-identical names, "NeuropixelsV2eHeadstage/PolledBno055". The two headstages and
+the <xref:OpenEphys.Onix1.ConfigureHeadstageNeuropixelsV2e> operators are both
+named "HeadstageNeuropixelsV2e". This causes their devices to also have
+identical names, "HeadstageNeuropixelsV2e/PolledBno055". The two headstages and
 their devices must be disambiguated. To do this, you must edit one or both of
 headstages' `Name` property:
 
@@ -46,8 +46,8 @@ After this, the disambiguated source can be selected for each data operator
 
 
 In the following workflow workflow, the `Name` property of each
-<xref:OpenEphys.Onix1.ConfigureNeuropixelsV2eHeadstage> has been changed from
-"NeuropixelsV2eHeadstage" to "HS-NPX-AB" and "HS-NPX-B". The `DeviceName` of
+<xref:OpenEphys.Onix1.ConfigureHeadstageNeuropixelsV2e> has been changed from
+"HeadstageNeuropixelsV2e" to "HS-NPX-AB" and "HS-NPX-B". The `DeviceName` of
 each of the <xref:OpenEphys.Onix1.PolledBno055Data> operators has been set to
 "HS-NPX-A/PolledBno055" and "HS-NPX-B/PolledBno055" from the dropdown so each
 operator will take data from a different headstage.

articles/hardware/np1e/bno055.md

@@ -4,6 +4,6 @@ title: NeuropixelsV1e Bno055
 bno055: true
 hardware: NeuropixelsV1e Headstage
 bnoOperator: PolledBno055Data
-hardwareOperator: NeuropixelsV1eHeadstage
+hardwareOperator: HeadstageNeuropixelsV1e
 workflowLocation: overview
 ---

articles/hardware/np1e/configuration.md

@@ -3,15 +3,15 @@ uid: np1e_configuration
 title: NeuropixelsV1e Headstage Configuration
 hardware: NeuropixelsV1e Headstage
 configuration: true
-operator: ConfigureNeuropixelsV1eHeadstage
+operator: ConfigureHeadstageNeuropixelsV1e
 dataRate: 20.6
 timeUntilFullBuffer: 400 μs
 blockReadSize: 8192
 workflowLocation: overview
 ---
 
 ## Configuring the NeuropixelsV1e Headstage
-The `NeuropixelsV1eHeadstage` operator is used to configure the Neuropixels V1e Headstage; this can enable streaming of electrophysiology data from a Neuropixels 1.0 probe and orientation data from a Bno055 IMU. This is accomplished in the example workflow by leaving all of the `NeuropixelsV1eHeadstage` properties set to their default values.
+The `HeadstageNeuropixelsV1e` operator is used to configure the Neuropixels V1e Headstage; this can enable streaming of electrophysiology data from a Neuropixels 1.0 probe and orientation data from a Bno055 IMU. This is accomplished in the example workflow by leaving all of the `HeadstageNeuropixelsV1e` properties set to their default values.
 
 Default values for the headstage are:
 - Enabling the first 384 electrodes for streaming (electrodes 0 through 383)
@@ -22,7 +22,7 @@ Default values for the headstage are:
 - Setting the `Reference` to *External*
 
 > [!IMPORTANT]
-> The workflow will not run unless gain calibration and ADC calibration files are provided. Click the `NeuropixelsV1eHeadstage` operator, expand `NeuropixelsV1e` in the properties pane, then choose the appropriate files by selecting either `GainCalibrationFile` or `AdcCalibrationFile` and clicking the <kbd>...</kbd> button.
+> The workflow will not run unless gain calibration and ADC calibration files are provided. Click the `HeadstageNeuropixelsV1e` operator, expand `NeuropixelsV1e` in the properties pane, then choose the appropriate files by selecting either `GainCalibrationFile` or `AdcCalibrationFile` and clicking the <kbd>...</kbd> button.
 
 > [!TIP]
 > For additional details on how to manually configure the headstage, such as enabling specific electrodes for recording, or modify AP / LFP gain, check out the <xref:np1e_gui> page.

articles/hardware/np1e/gui.md

@@ -8,7 +8,7 @@ The `NeuropixelsV1e` headstage has a graphical user interface when the `OpenEphy
 
 ## Overview
 
-For `NeuropixelsV1eHeadstage`, the GUI allows for an easy way to change settings and visualize the effect. From the GUI, you can:
+For `HeadstageNeuropixelsV1e`, the GUI allows for an easy way to change settings and visualize the effect. From the GUI, you can:
 
 - Configure the <xref:OpenEphys.Onix1.NeuropixelsV1ProbeConfiguration>
     - Choose the ADC calibration file
@@ -21,7 +21,7 @@ For `NeuropixelsV1eHeadstage`, the GUI allows for an easy way to change settings
 - Configure the [Bno055](xref:OpenEphys.Onix1.ConfigurePolledBno055)
     - Enable and disable the <xref:OpenEphys.Onix1.PolledBno055Data> stream
 
-The configuration dialog is accessible by double-clicking on the <xref:OpenEphys.Onix1.ConfigureNeuropixelsV1eHeadstage> operator.
+The configuration dialog is accessible by double-clicking on the <xref:OpenEphys.Onix1.ConfigureHeadstageNeuropixelsV1e> operator.
 
 ### Channel constraints
 
@@ -47,13 +47,13 @@ If the window is closed any other way (such as by pressing `Cancel`, or pressing
 
 ### ProbeInterface
 
-The `NeuropixelsV1eHeadstage` GUI uses [ProbeInterface](https://probeinterface.readthedocs.io/en/main/index.html) as the format to draw the probes and electrodes visually. For more information on ProbeInterface and the resulting JSON file, check out their [format specifications](https://probeinterface.readthedocs.io/en/main/format_spec.html) page. 
+The `HeadstageNeuropixelsV1e` GUI uses [ProbeInterface](https://probeinterface.readthedocs.io/en/main/index.html) as the format to draw the probes and electrodes visually. For more information on ProbeInterface and the resulting JSON file, check out their [format specifications](https://probeinterface.readthedocs.io/en/main/format_spec.html) page. 
 
 When opening the GUI, there is a default probe configuration that is loaded and drawn, which can be saved to a [JSON file](#save-probeinterface-file). Conversely, an existing JSON file can be [loaded](#load-probeinterface-file) to update the current channel configuration. If for any reason the default configuration is needed, it can be [loaded again](#load-default-configuration) at any time.
 
 ## Open Headstage Configuration GUI
 
-To open the headstage configuration GUI, double-click the `ConfigureNeuropixelsV1eHeadstage` operator.
+To open the headstage configuration GUI, double-click the `ConfigureHeadstageNeuropixelsV1e` operator.
 
 ![Open the GUI](../../..//images/neuropixelsv1e-gui-tut/bonsai-editor-where-to-click.png)
 

articles/hardware/np1e/np1.md

@@ -17,7 +17,7 @@ The <xref:OpenEphys.Onix1.NeuropixelsV1eData> operator generates a sequence of
   channel x 36 sample] `SpikeData` matrix, and a [384 channel x 3 sample] `LfpData` matrix. The Neuropixels 1.0 probe
   samples AP data at 30 kHz per channel (LFP data is sampled at a rate of 1/12 of the rate AP data) so this corresponds
   to 1.2 ms of data.
-- `DeviceName` is set to "NeuropixelsV1eHeadstage/NeuropixelsV1e". This links the `NeuropixelsV1eData` operator to the
+- `DeviceName` is set to "HeadstageNeuropixelsV1e/NeuropixelsV1e". This links the `NeuropixelsV1eData` operator to the
   corresponding configuration operator.
 
 Given the settings above, each frame will contain a [1 x 36 sample] `Clock` vector, a [384 channel x 36 sample]

articles/hardware/np1e/port-status.md

@@ -3,7 +3,7 @@ uid: np1e_port-status
 title: NeuropixelsV1e Headstage Port Status
 hardware: NeuropixelsV1e Headstage
 portStatus: true
-configureHardwareOperator: ConfigureNeuropixelsV1eHeadstage
-hardwareOperator: NeuropixelsV1eHeadstage
+configureHardwareOperator: ConfigureHeadstageNeuropixelsV1e
+hardwareOperator: HeadstageNeuropixelsV1e
 workflowLocation: overview
 ---

articles/hardware/np2e/bno055.md

@@ -4,6 +4,6 @@ title: NeuropixelsV2e Bno055
 bno055: true
 hardware: NeuropixelsV2e Headstage
 bnoOperator: PolledBno055Data
-hardwareOperator: NeuropixelsV2eHeadstage
+hardwareOperator: HeadstageNeuropixelsV2e
 workflowLocation: overview
 ---

articles/hardware/np2e/configuration.md

@@ -3,26 +3,26 @@ uid: np2e_configuration
 title: NeuropixelsV2e Headstage Configuration
 hardware: NeuropixelsV2e Headstage
 configuration: true
-operator: ConfigureNeuropixelsV2eHeadstage
+operator: ConfigureHeadstageNeuropixelsV2e
 dataRate: 18.1
 timeUntilFullBuffer: 440 μs
 blockReadSize: 8192
 workflowLocation: overview
 ---
 
 > [!NOTE]
-> The NeuropixelsV2eBeta Headstage functions nearly identically to the NeuropixelsV2e Headstage. Simply replace `ConfigureNeuropixelsV2eHeadstage` with `ConfigureNeuropixelsV2eBetaHeadstage`.
+> The NeuropixelsV2eBeta Headstage functions nearly identically to the NeuropixelsV2e Headstage. Simply replace `ConfigureHeadstageNeuropixelsV2e` with `ConfigureHeadstageNeuropixelsV2eBeta`.
 
 ## Configuring the NeuropixelsV2e headstage
-The `NeuropixelsV2eHeadstage` operator is set to configure the NeuropixelsV2e Headstage; this can enable streaming of electrophysiology data from a Neuropixels 2.0 probe and orientation data from a Bno055 IMU. This is accomplished in the NeuropixelsV2e Headstage example workflow by leaving all of the `NeuropixelsV2eHeadstage` properties set to their default values.
+The `HeadstageNeuropixelsV2e` operator is set to configure the NeuropixelsV2e Headstage; this can enable streaming of electrophysiology data from a Neuropixels 2.0 probe and orientation data from a Bno055 IMU. This is accomplished in the NeuropixelsV2e Headstage example workflow by leaving all of the `HeadstageNeuropixelsV2e` properties set to their default values.
 
 Default values for the headstage are:
 - Enabling the first 384 electrodes of the first shank for streaming (shank 0, electrodes 0 through 383)
     - This is also known as the **Shank 0 Bank A** `Channel Preset`
 - Setting the `Reference` to *External*
 
 > [!IMPORTANT]
-> The workflow will not run unless gain correction files are provided. Click the `NeuropixelsV2eHeadstage` operator, expand `NeuropixelsV2e` in the property pane, then choose the appropriate files by selecting either `GainCalibrationFileA` or `GainCalibrationFileB` and clicking the <kbd>...</kbd> button. If only one probe is plugged in, only one file is required.
+> The workflow will not run unless gain correction files are provided. Click the `HeadstageNeuropixelsV2e` operator, expand `NeuropixelsV2e` in the property pane, then choose the appropriate files by selecting either `GainCalibrationFileA` or `GainCalibrationFileB` and clicking the <kbd>...</kbd> button. If only one probe is plugged in, only one file is required.
 
 > [!TIP]
 > For additional details on how to manually configure the headstage, such as enabling specific electrodes for recording, or modify AP / LFP gain, check out the <xref:np2e_gui> page.

articles/hardware/np2e/gui.md

@@ -10,7 +10,7 @@ The `NeuropixelsV2e` headstage has a graphical user interface when the `OpenEphy
 
 ## Overview
 
-For `NeuropixelsV2eHeadstage`, the GUI allows for an easy way to change settings and visualize the effect. From the GUI, you can:
+For `HeadstageNeuropixelsV2e`, the GUI allows for an easy way to change settings and visualize the effect. From the GUI, you can:
 
 - Configure `Probe A` and `Probe B` independently
     - Choose the probe calibration file
@@ -47,7 +47,7 @@ If the window is closed any other way (such as by pressing `Cancel`, or pressing
 
 ### ProbeInterface
 
-The `NeuropixelsV2eHeadstage` GUI uses [ProbeInterface](https://probeinterface.readthedocs.io/en/main/index.html) as the format to draw the probes and electrodes visually. For more information on ProbeInterface and the resulting JSON file, check out their [format specifications](https://probeinterface.readthedocs.io/en/main/format_spec.html) page. 
+The `HeadstageNeuropixelsV2e` GUI uses [ProbeInterface](https://probeinterface.readthedocs.io/en/main/index.html) as the format to draw the probes and electrodes visually. For more information on ProbeInterface and the resulting JSON file, check out their [format specifications](https://probeinterface.readthedocs.io/en/main/format_spec.html) page. 
 
 When opening the GUI, there is a default probe configuration that is loaded and drawn, which can be saved to a [JSON file](#save-probeinterface-file). Conversely, an existing JSON file can be [loaded](#load-probeinterface-file) to update the current channel configuration. If for any reason the default configuration is needed, it can be [loaded again](#load-default-configuration) at any time.
 
@@ -56,7 +56,7 @@ When opening the GUI, there is a default probe configuration that is loaded and
 ![Open the GUI](../../../images/neuropixelsv2e-gui-tut/bonsai-editor-where-to-click.png)
 
 Steps to open the Probe Configuration GUI:
-- Select the `ConfigureNeuropixelsV2eHeadstage` node.
+- Select the `ConfigureHeadstageNeuropixelsV2e` node.
 - Click on the `NeuropixelsV2eProbeConfiguration` to edit (either `ProbeConfigurationA` or `ProbeConfigurationB`).
 - Select the <kbd>...</kbd> button on the right-most part of the property pane (#1 above).
 
@@ -176,7 +176,7 @@ To load the default channel configuration at any time, navigate to the File drop
 
 Step to open the headstage configuration GUI
 
-  - Double-click the `ConfigureNeuropixelsV2eHeadstage` node (#2 above)
+  - Double-click the `ConfigureHeadstageNeuropixelsV2e` node (#2 above)
 
 Once opened, if no probe calibration is selected for either `Probe A` or `Probe B`, then both tabs will only show their controls on the right and no probes (see below).
 

articles/hardware/np2e/np2.md

@@ -7,7 +7,7 @@ hardware: NeuropixelsV2e Headstage
 > [!NOTE] 
 > The NeuropixelsV2eBeta Headstage functions nearly identically to the NeuropixelsV2e Headstage. Simply replace
 > `NeuropixelsV2eData` with `NeuropixelsV2eBetaData` and set its `DeviceName` property to
-> "NeuropixelsV2eBetaHeadstage/NeuropixelsV2eBeta". 
+> "HeadstageNeuropixelsV2eBeta/NeuropixelsV2eBeta". 
 
 The following excerpt from the NeuropixelsV2e Headstage [example workflow](xref:np2e) demonstrates Neuropixels 2.0 probe
 functionality by streaming data and saves Neuropixels 2.0 probe data. The second chain is disabled by default, assuming
@@ -24,7 +24,7 @@ The <xref:OpenEphys.Onix1.NeuropixelsV2eData> operator generates a sequence of
 - `BufferSize` is set to 30. Therefore, each frame will contain a [1 x 30 sample] `Clock` vector and a [384 channel x 30
   sample] `AmplifierData` matrix. The Neuropixels 2.0 probe samples at 30 kHz per channel so this corresponds to 1 ms of
   data.
-- `DeviceName` is set to "NeuropixelsV2eHeadstage/NeuropixelsV2e". This links the `NeuropixelsV2eData` operator to the
+- `DeviceName` is set to "HeadstageNeuropixelsV2e/NeuropixelsV2e". This links the `NeuropixelsV2eData` operator to the
   corresponding configuration operator. 
 - `ProbeIndex` is set to "ProbeA". This links the data generated by this probe to the probe in port A of the headstage.